Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC21.74■■□□□ 1.07
CTCFP49711 CSF3-203ENST00000394148 622 ntTSL 3 BASIC21.74■■□□□ 1.07
CTCFP49711 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.74■■□□□ 1.07
CTCFP49711 AC004832.2-201ENST00000426397 482 ntBASIC21.74■■□□□ 1.07
CTCFP49711 HNRNPDP1-201ENST00000439535 754 ntBASIC21.74■■□□□ 1.07
CTCFP49711 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC21.74■■□□□ 1.07
CTCFP49711 GUSBP12-201ENST00000513727 720 ntBASIC21.74■■□□□ 1.07
CTCFP49711 AC034105.1-201ENST00000563488 319 ntBASIC21.74■■□□□ 1.07
CTCFP49711 ORC5-208ENST00000626700 344 ntTSL 3 BASIC21.74■■□□□ 1.07
CTCFP49711 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
CTCFP49711 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CTCFP49711 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.74■■□□□ 1.07
CTCFP49711 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTCFP49711 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.73■■□□□ 1.07
CTCFP49711 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CTCFP49711 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC21.73■■□□□ 1.07
CTCFP49711 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTCFP49711 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTCFP49711 AL645939.2-201ENST00000427340 991 ntBASIC21.73■■□□□ 1.07
CTCFP49711 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTCFP49711 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CTCFP49711 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CTCFP49711 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC21.73■■□□□ 1.07
CTCFP49711 PRR29-209ENST00000582540 967 ntTSL 2 BASIC21.73■■□□□ 1.07
CTCFP49711 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC21.73■■□□□ 1.07
CTCFP49711 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC21.73■■□□□ 1.07
CTCFP49711 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.73■■□□□ 1.07
CTCFP49711 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTCFP49711 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CTCFP49711 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CTCFP49711 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.73■■□□□ 1.07
CTCFP49711 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.72■■□□□ 1.07
CTCFP49711 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CTCFP49711 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CTCFP49711 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC21.72■■□□□ 1.07
CTCFP49711 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CTCFP49711 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.72■■□□□ 1.07
CTCFP49711 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.72■■□□□ 1.07
CTCFP49711 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
CTCFP49711 MIR5100-201ENST00000579544 119 ntBASIC21.72■■□□□ 1.07
CTCFP49711 AP005901.3-202ENST00000581653 237 ntBASIC21.72■■□□□ 1.07
CTCFP49711 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CTCFP49711 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.72■■□□□ 1.07
CTCFP49711 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.72■■□□□ 1.07
CTCFP49711 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTCFP49711 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.71■■□□□ 1.07
CTCFP49711 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTCFP49711 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTCFP49711 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTCFP49711 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTCFP49711 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTCFP49711 AC036111.1-201ENST00000533973 1582 ntBASIC21.71■■□□□ 1.07
CTCFP49711 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.71■■□□□ 1.07
CTCFP49711 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CTCFP49711 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTCFP49711 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.71■■□□□ 1.07
CTCFP49711 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC21.71■■□□□ 1.07
CTCFP49711 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.71■■□□□ 1.07
CTCFP49711 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.71■■□□□ 1.07
CTCFP49711 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.71■■□□□ 1.07
CTCFP49711 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CTCFP49711 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CTCFP49711 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTCFP49711 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.71■■□□□ 1.07
CTCFP49711 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.71■■□□□ 1.07
CTCFP49711 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTCFP49711 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.07
CTCFP49711 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.07
CTCFP49711 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CTCFP49711 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.7■■□□□ 1.06
CTCFP49711 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms