Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CUX1P39880 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CUX1P39880 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
CUX1P39880 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CUX1P39880 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC31.45■■■□□ 2.62
CUX1P39880 AL137060.1-201ENST00000618151 2648 ntBASIC31.45■■■□□ 2.62
CUX1P39880 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC31.45■■■□□ 2.62
CUX1P39880 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC31.45■■■□□ 2.62
CUX1P39880 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC31.45■■■□□ 2.62
CUX1P39880 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX1P39880 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX1P39880 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX1P39880 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC31.44■■■□□ 2.62
CUX1P39880 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC31.44■■■□□ 2.62
CUX1P39880 ABR-217ENST00000572441 563 ntTSL 4 BASIC31.44■■■□□ 2.62
CUX1P39880 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX1P39880 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX1P39880 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX1P39880 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX1P39880 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC31.44■■■□□ 2.62
CUX1P39880 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC31.44■■■□□ 2.62
CUX1P39880 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CUX1P39880 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CUX1P39880 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
CUX1P39880 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC31.43■■■□□ 2.62
CUX1P39880 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
CUX1P39880 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CUX1P39880 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC31.43■■■□□ 2.62
CUX1P39880 AL353692.3-201ENST00000407031 1396 ntBASIC31.43■■■□□ 2.62
CUX1P39880 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC31.43■■■□□ 2.62
CUX1P39880 KRT18P67-201ENST00000432816 1264 ntBASIC31.43■■■□□ 2.62
CUX1P39880 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC31.43■■■□□ 2.62
CUX1P39880 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC31.43■■■□□ 2.62
CUX1P39880 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CUX1P39880 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC31.43■■■□□ 2.62
CUX1P39880 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
CUX1P39880 AC068587.9-201ENST00000641814 219 ntBASIC31.43■■■□□ 2.62
CUX1P39880 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CUX1P39880 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CUX1P39880 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
CUX1P39880 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC31.42■■■□□ 2.62
CUX1P39880 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CUX1P39880 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CUX1P39880 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CUX1P39880 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC31.42■■■□□ 2.62
CUX1P39880 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CUX1P39880 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC31.42■■■□□ 2.62
CUX1P39880 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CUX1P39880 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC31.42■■■□□ 2.62
CUX1P39880 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX1P39880 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC31.41■■■□□ 2.62
CUX1P39880 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX1P39880 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
CUX1P39880 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC31.41■■■□□ 2.62
CUX1P39880 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
CUX1P39880 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC31.41■■■□□ 2.62
CUX1P39880 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX1P39880 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX1P39880 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
CUX1P39880 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX1P39880 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CUX1P39880 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CUX1P39880 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CUX1P39880 TLE1-202ENST00000376484 666 ntTSL 3 BASIC31.4■■■□□ 2.62
CUX1P39880 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC31.4■■■□□ 2.62
CUX1P39880 VENTXP7-201ENST00000475503 772 ntBASIC31.4■■■□□ 2.62
CUX1P39880 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC31.4■■■□□ 2.62
CUX1P39880 AC005336.2-201ENST00000593183 939 ntBASIC31.4■■■□□ 2.62
CUX1P39880 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC31.4■■■□□ 2.62
CUX1P39880 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC31.4■■■□□ 2.62
CUX1P39880 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC31.4■■■□□ 2.62
CUX1P39880 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CUX1P39880 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC31.4■■■□□ 2.62
CUX1P39880 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC31.4■■■□□ 2.62
CUX1P39880 AC112907.3-201ENST00000577781 2400 ntBASIC31.39■■■□□ 2.62
CUX1P39880 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CUX1P39880 GUSBP12-201ENST00000513727 720 ntBASIC31.39■■■□□ 2.62
CUX1P39880 REEP1-209ENST00000541910 969 ntTSL 2 BASIC31.39■■■□□ 2.62
CUX1P39880 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CUX1P39880 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CUX1P39880 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CUX1P39880 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CUX1P39880 IRX1P1-201ENST00000438849 1838 ntBASIC31.39■■■□□ 2.62
CUX1P39880 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC31.39■■■□□ 2.62
CUX1P39880 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
CUX1P39880 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC31.39■■■□□ 2.61
CUX1P39880 ABBA01031661.1-201ENST00000634362 1253 ntBASIC31.39■■■□□ 2.61
CUX1P39880 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CUX1P39880 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CUX1P39880 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC31.38■■■□□ 2.61
CUX1P39880 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CUX1P39880 AC125437.2-201ENST00000625180 2167 ntBASIC31.38■■■□□ 2.61
CUX1P39880 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC31.38■■■□□ 2.61
CUX1P39880 KRT8P50-201ENST00000562022 1438 ntBASIC31.38■■■□□ 2.61
CUX1P39880 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CUX1P39880 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CUX1P39880 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC31.38■■■□□ 2.61
CUX1P39880 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC31.38■■■□□ 2.61
CUX1P39880 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
CUX1P39880 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms