Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.98
CIITAP33076 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.16■□□□□ 0.98
CIITAP33076 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.16■□□□□ 0.98
CIITAP33076 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CIITAP33076 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CIITAP33076 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.16■□□□□ 0.98
CIITAP33076 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.16■□□□□ 0.98
CIITAP33076 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CIITAP33076 AC034236.2-201ENST00000606662 1610 ntBASIC21.16■□□□□ 0.98
CIITAP33076 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CIITAP33076 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.16■□□□□ 0.98
CIITAP33076 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.16■□□□□ 0.98
CIITAP33076 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CIITAP33076 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.16■□□□□ 0.98
CIITAP33076 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.16■□□□□ 0.98
CIITAP33076 KRT18P41-201ENST00000518924 1277 ntBASIC21.16■□□□□ 0.98
CIITAP33076 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.16■□□□□ 0.98
CIITAP33076 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.16■□□□□ 0.98
CIITAP33076 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.16■□□□□ 0.98
CIITAP33076 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.16■□□□□ 0.98
CIITAP33076 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.16■□□□□ 0.98
CIITAP33076 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
CIITAP33076 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CIITAP33076 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CIITAP33076 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CIITAP33076 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.15■□□□□ 0.98
CIITAP33076 Z98044.1-201ENST00000632503 1764 ntBASIC21.15■□□□□ 0.98
CIITAP33076 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CIITAP33076 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CIITAP33076 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CIITAP33076 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.15■□□□□ 0.98
CIITAP33076 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CIITAP33076 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.15■□□□□ 0.98
CIITAP33076 FAM8A6P-201ENST00000407496 1135 ntBASIC21.15■□□□□ 0.98
CIITAP33076 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CIITAP33076 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.15■□□□□ 0.98
CIITAP33076 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.15■□□□□ 0.98
CIITAP33076 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CIITAP33076 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.15■□□□□ 0.98
CIITAP33076 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CIITAP33076 GCSHP2-201ENST00000560971 527 ntBASIC21.15■□□□□ 0.98
CIITAP33076 AL049597.2-201ENST00000565575 961 ntBASIC21.15■□□□□ 0.98
CIITAP33076 AC112497.1-201ENST00000624824 639 ntBASIC21.15■□□□□ 0.98
CIITAP33076 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CIITAP33076 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
CIITAP33076 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.15■□□□□ 0.98
CIITAP33076 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CIITAP33076 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.15■□□□□ 0.98
CIITAP33076 AC093525.10-201ENST00000625130 1569 ntBASIC21.14■□□□□ 0.98
CIITAP33076 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CIITAP33076 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CIITAP33076 MIR1224-201ENST00000408193 85 ntBASIC21.14■□□□□ 0.97
CIITAP33076 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.14■□□□□ 0.97
CIITAP33076 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.14■□□□□ 0.97
CIITAP33076 SEC1P-202ENST00000473944 940 ntBASIC21.14■□□□□ 0.97
CIITAP33076 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.14■□□□□ 0.97
CIITAP33076 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.14■□□□□ 0.97
CIITAP33076 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.14■□□□□ 0.97
CIITAP33076 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.14■□□□□ 0.97
CIITAP33076 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CIITAP33076 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CIITAP33076 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.14■□□□□ 0.97
CIITAP33076 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CIITAP33076 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CIITAP33076 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CIITAP33076 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.14■□□□□ 0.97
CIITAP33076 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CIITAP33076 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CIITAP33076 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
CIITAP33076 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CIITAP33076 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.13■□□□□ 0.97
CIITAP33076 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CIITAP33076 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.13■□□□□ 0.97
CIITAP33076 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CIITAP33076 BX323043.1-201ENST00000641006 1765 ntBASIC21.13■□□□□ 0.97
CIITAP33076 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
CIITAP33076 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.13■□□□□ 0.97
CIITAP33076 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms