Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP3P08254 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP3P08254 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP3P08254 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
MMP3P08254 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
MMP3P08254 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.81■□□□□ 0.92
MMP3P08254 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.81■□□□□ 0.92
MMP3P08254 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
MMP3P08254 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MMP3P08254 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP3P08254 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP3P08254 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.8■□□□□ 0.92
MMP3P08254 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.8■□□□□ 0.92
MMP3P08254 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MMP3P08254 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MMP3P08254 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.8■□□□□ 0.92
MMP3P08254 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
MMP3P08254 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
MMP3P08254 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MMP3P08254 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MMP3P08254 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MMP3P08254 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.8■□□□□ 0.92
MMP3P08254 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MMP3P08254 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.8■□□□□ 0.92
MMP3P08254 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.8■□□□□ 0.92
MMP3P08254 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.8■□□□□ 0.92
MMP3P08254 PVRIG2P-201ENST00000435460 978 ntBASIC20.8■□□□□ 0.92
MMP3P08254 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.8■□□□□ 0.92
MMP3P08254 TPSP2-201ENST00000561760 610 ntBASIC20.8■□□□□ 0.92
MMP3P08254 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.8■□□□□ 0.92
MMP3P08254 RN7SL510P-201ENST00000581311 263 ntBASIC20.8■□□□□ 0.92
MMP3P08254 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
MMP3P08254 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
MMP3P08254 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
MMP3P08254 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MMP3P08254 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MMP3P08254 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MMP3P08254 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MMP3P08254 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.79■□□□□ 0.92
MMP3P08254 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 Z83836.1-201ENST00000624605 1642 ntBASIC20.79■□□□□ 0.92
MMP3P08254 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.79■□□□□ 0.92
MMP3P08254 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
MMP3P08254 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
MMP3P08254 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.79■□□□□ 0.92
MMP3P08254 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.79■□□□□ 0.92
MMP3P08254 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.79■□□□□ 0.92
MMP3P08254 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.79■□□□□ 0.92
MMP3P08254 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
MMP3P08254 AC068587.9-201ENST00000641814 219 ntBASIC20.79■□□□□ 0.92
MMP3P08254 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP3P08254 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.78■□□□□ 0.92
MMP3P08254 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.78■□□□□ 0.92
MMP3P08254 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.78■□□□□ 0.92
MMP3P08254 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP3P08254 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.78■□□□□ 0.92
MMP3P08254 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.78■□□□□ 0.92
MMP3P08254 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP3P08254 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP3P08254 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.78■□□□□ 0.92
MMP3P08254 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
MMP3P08254 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.78■□□□□ 0.92
MMP3P08254 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.78■□□□□ 0.92
MMP3P08254 DRAXINP1-201ENST00000437611 948 ntBASIC20.78■□□□□ 0.92
MMP3P08254 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.78■□□□□ 0.92
MMP3P08254 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MMP3P08254 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.78■□□□□ 0.92
MMP3P08254 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.78■□□□□ 0.92
MMP3P08254 AC111152.3-201ENST00000569699 673 ntBASIC20.78■□□□□ 0.92
MMP3P08254 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.78■□□□□ 0.92
MMP3P08254 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.78■□□□□ 0.92
MMP3P08254 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP3P08254 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP3P08254 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.78■□□□□ 0.92
MMP3P08254 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.78■□□□□ 0.92
MMP3P08254 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP3P08254 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP3P08254 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.78■□□□□ 0.92
MMP3P08254 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.78■□□□□ 0.92
MMP3P08254 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP3P08254 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.78■□□□□ 0.92
MMP3P08254 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP3P08254 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
MMP3P08254 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.77■□□□□ 0.92
MMP3P08254 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MMP3P08254 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MMP3P08254 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.77■□□□□ 0.92
MMP3P08254 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
MMP3P08254 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms