Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP1O15259 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP1O15259 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
NPHP1O15259 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP1O15259 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP1O15259 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC23.63■■□□□ 1.37
NPHP1O15259 LINC00265-3P-201ENST00000447588 903 ntBASIC23.63■■□□□ 1.37
NPHP1O15259 AP000867.3-201ENST00000524675 377 ntBASIC23.63■■□□□ 1.37
NPHP1O15259 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
NPHP1O15259 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC23.63■■□□□ 1.37
NPHP1O15259 IFNL4P1-201ENST00000607083 540 ntBASIC23.63■■□□□ 1.37
NPHP1O15259 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP1O15259 AC079602.3-201ENST00000623931 403 ntBASIC23.63■■□□□ 1.37
NPHP1O15259 AC093525.10-201ENST00000625130 1569 ntBASIC23.63■■□□□ 1.37
NPHP1O15259 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC23.63■■□□□ 1.37
NPHP1O15259 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC23.63■■□□□ 1.37
NPHP1O15259 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP1O15259 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
NPHP1O15259 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP1O15259 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.63■■□□□ 1.37
NPHP1O15259 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP1O15259 AC099778.1-201ENST00000568593 1911 ntBASIC23.63■■□□□ 1.37
NPHP1O15259 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
NPHP1O15259 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP1O15259 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP1O15259 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC23.62■■□□□ 1.37
NPHP1O15259 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP1O15259 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
NPHP1O15259 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC23.62■■□□□ 1.37
NPHP1O15259 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 FDX1P1-201ENST00000449115 551 ntBASIC23.62■■□□□ 1.37
NPHP1O15259 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP1O15259 PNN-202ENST00000553331 656 ntTSL 3 BASIC23.62■■□□□ 1.37
NPHP1O15259 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC23.62■■□□□ 1.37
NPHP1O15259 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
NPHP1O15259 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
NPHP1O15259 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
NPHP1O15259 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 GABARAPL3-202ENST00000624044 1851 ntBASIC23.62■■□□□ 1.37
NPHP1O15259 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP1O15259 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
NPHP1O15259 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
NPHP1O15259 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP1O15259 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP1O15259 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP1O15259 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
NPHP1O15259 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP1O15259 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP1O15259 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP1O15259 NUS1P1-201ENST00000446295 882 ntBASIC23.61■■□□□ 1.37
NPHP1O15259 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
NPHP1O15259 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC23.61■■□□□ 1.37
NPHP1O15259 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC23.61■■□□□ 1.37
NPHP1O15259 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC23.61■■□□□ 1.37
NPHP1O15259 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP1O15259 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP1O15259 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP1O15259 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC23.61■■□□□ 1.37
NPHP1O15259 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP1O15259 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP1O15259 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
NPHP1O15259 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC23.6■■□□□ 1.37
NPHP1O15259 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP1O15259 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP1O15259 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP1O15259 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP1O15259 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP1O15259 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC23.6■■□□□ 1.37
NPHP1O15259 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP1O15259 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC23.6■■□□□ 1.37
NPHP1O15259 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC23.6■■□□□ 1.37
NPHP1O15259 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
NPHP1O15259 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC23.6■■□□□ 1.37
NPHP1O15259 AL391807.1-203ENST00000604392 2365 ntBASIC23.6■■□□□ 1.37
NPHP1O15259 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
NPHP1O15259 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP1O15259 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP1O15259 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP1O15259 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP1O15259 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC23.6■■□□□ 1.37
NPHP1O15259 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
NPHP1O15259 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms