Protein–RNA interactions for Protein: O14983

ATP2A1, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2A1O14983 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.51■■□□□ 1.03
ATP2A1O14983 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.51■■□□□ 1.03
ATP2A1O14983 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
ATP2A1O14983 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ATP2A1O14983 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ATP2A1O14983 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ATP2A1O14983 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
ATP2A1O14983 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ATP2A1O14983 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.51■■□□□ 1.03
ATP2A1O14983 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ATP2A1O14983 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
ATP2A1O14983 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
ATP2A1O14983 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.51■■□□□ 1.03
ATP2A1O14983 MIR662-201ENST00000384847 95 ntBASIC21.51■■□□□ 1.03
ATP2A1O14983 MIR564-202ENST00000385049 94 ntBASIC21.51■■□□□ 1.03
ATP2A1O14983 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.51■■□□□ 1.03
ATP2A1O14983 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.51■■□□□ 1.03
ATP2A1O14983 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.51■■□□□ 1.03
ATP2A1O14983 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ATP2A1O14983 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.51■■□□□ 1.03
ATP2A1O14983 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
ATP2A1O14983 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
ATP2A1O14983 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
ATP2A1O14983 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
ATP2A1O14983 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ATP2A1O14983 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ATP2A1O14983 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
ATP2A1O14983 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ATP2A1O14983 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ATP2A1O14983 AL162741.1-201ENST00000565563 1558 ntBASIC21.5■■□□□ 1.03
ATP2A1O14983 AL391807.1-203ENST00000604392 2365 ntBASIC21.5■■□□□ 1.03
ATP2A1O14983 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ATP2A1O14983 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.5■■□□□ 1.03
ATP2A1O14983 AL136038.4-201ENST00000603606 1261 ntBASIC21.5■■□□□ 1.03
ATP2A1O14983 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.5■■□□□ 1.03
ATP2A1O14983 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ATP2A1O14983 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.5■■□□□ 1.03
ATP2A1O14983 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ATP2A1O14983 AC141586.3-201ENST00000562166 1838 ntBASIC21.5■■□□□ 1.03
ATP2A1O14983 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ATP2A1O14983 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.5■■□□□ 1.03
ATP2A1O14983 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.5■■□□□ 1.03
ATP2A1O14983 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.5■■□□□ 1.03
ATP2A1O14983 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ATP2A1O14983 AC016734.2-201ENST00000624325 1377 ntBASIC21.49■■□□□ 1.03
ATP2A1O14983 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 FP475955.4-201ENST00000623131 1990 ntBASIC21.49■■□□□ 1.03
ATP2A1O14983 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.49■■□□□ 1.03
ATP2A1O14983 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.49■■□□□ 1.03
ATP2A1O14983 AL450487.1-201ENST00000426799 995 ntBASIC21.49■■□□□ 1.03
ATP2A1O14983 KRT18P23-201ENST00000435622 1283 ntBASIC21.49■■□□□ 1.03
ATP2A1O14983 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.49■■□□□ 1.03
ATP2A1O14983 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.49■■□□□ 1.03
ATP2A1O14983 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.49■■□□□ 1.03
ATP2A1O14983 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.49■■□□□ 1.03
ATP2A1O14983 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.49■■□□□ 1.03
ATP2A1O14983 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.49■■□□□ 1.03
ATP2A1O14983 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.49■■□□□ 1.03
ATP2A1O14983 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.49■■□□□ 1.03
ATP2A1O14983 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.49■■□□□ 1.03
ATP2A1O14983 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.49■■□□□ 1.03
ATP2A1O14983 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.49■■□□□ 1.03
ATP2A1O14983 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
ATP2A1O14983 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.49■■□□□ 1.03
ATP2A1O14983 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ATP2A1O14983 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
ATP2A1O14983 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.48■■□□□ 1.03
ATP2A1O14983 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ATP2A1O14983 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
ATP2A1O14983 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
ATP2A1O14983 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
ATP2A1O14983 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ATP2A1O14983 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
ATP2A1O14983 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.48■■□□□ 1.03
ATP2A1O14983 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
ATP2A1O14983 AL121672.3-201ENST00000608644 468 ntBASIC21.48■■□□□ 1.03
ATP2A1O14983 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ATP2A1O14983 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ATP2A1O14983 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ATP2A1O14983 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
ATP2A1O14983 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
ATP2A1O14983 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ATP2A1O14983 AC093525.10-201ENST00000625130 1569 ntBASIC21.48■■□□□ 1.03
ATP2A1O14983 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ATP2A1O14983 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
ATP2A1O14983 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ATP2A1O14983 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ATP2A1O14983 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.47■■□□□ 1.03
ATP2A1O14983 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ATP2A1O14983 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms