Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 SNORA40-201ENST00000388090 126 ntBASIC-3.12□□□□□ -2.91
NUP98P52948 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-3.12□□□□□ -2.91
NUP98P52948 Y_RNA.61-201ENST00000362835 102 ntBASIC-3.13□□□□□ -2.91
NUP98P52948 RNU6-665P-201ENST00000384639 107 ntBASIC-3.13□□□□□ -2.91
NUP98P52948 RNU6-542P-201ENST00000516405 103 ntBASIC-3.13□□□□□ -2.91
NUP98P52948 MIR7110-201ENST00000612638 86 ntBASIC-3.13□□□□□ -2.91
NUP98P52948 RNU6-633P-201ENST00000362612 103 ntBASIC-3.14□□□□□ -2.91
NUP98P52948 Y_RNA.93-201ENST00000363066 109 ntBASIC-3.14□□□□□ -2.91
NUP98P52948 MIR124-1-201ENST00000385275 85 ntBASIC-3.14□□□□□ -2.91
NUP98P52948 MTCYBP9-201ENST00000431021 303 ntBASIC-3.14□□□□□ -2.91
NUP98P52948 Y_RNA.107-201ENST00000363190 121 ntBASIC-3.15□□□□□ -2.91
NUP98P52948 AC074348.1-201ENST00000426503 132 ntBASIC-3.15□□□□□ -2.91
NUP98P52948 Y_RNA.343-201ENST00000365354 112 ntBASIC-3.16□□□□□ -2.91
NUP98P52948 RNU6-738P-201ENST00000384531 106 ntBASIC-3.16□□□□□ -2.91
NUP98P52948 SNORA40B-201ENST00000385573 128 ntBASIC-3.16□□□□□ -2.91
NUP98P52948 SNORD116.2-201ENST00000391251 93 ntBASIC-3.16□□□□□ -2.92
NUP98P52948 RNU6-162P-201ENST00000516228 103 ntBASIC-3.16□□□□□ -2.92
NUP98P52948 Y_RNA.206-201ENST00000364136 102 ntBASIC-3.17□□□□□ -2.92
NUP98P52948 SNORD115-45-201ENST00000391078 81 ntBASIC-3.17□□□□□ -2.92
NUP98P52948 RNU7-107P-201ENST00000459121 61 ntBASIC-3.17□□□□□ -2.92
NUP98P52948 MIR3914-2-201ENST00000637339 95 ntBASIC-3.17□□□□□ -2.92
NUP98P52948 AL353621.2-201ENST00000605340 133 ntBASIC-3.18□□□□□ -2.92
NUP98P52948 RNU6-1325P-201ENST00000364905 105 ntBASIC-3.19□□□□□ -2.92
NUP98P52948 RNU6-742P-201ENST00000365289 107 ntBASIC-3.19□□□□□ -2.92
NUP98P52948 Y_RNA.382-201ENST00000365672 114 ntBASIC-3.19□□□□□ -2.92
NUP98P52948 AC093729.1-201ENST00000513074 128 ntBASIC-3.19□□□□□ -2.92
NUP98P52948 RNU6-1161P-201ENST00000516176 102 ntBASIC-3.19□□□□□ -2.92
NUP98P52948 SNORD33.1-201ENST00000516213 88 ntBASIC-3.19□□□□□ -2.92
NUP98P52948 Y_RNA.818-201ENST00000618813 71 ntBASIC-3.19□□□□□ -2.92
NUP98P52948 MIR568-201ENST00000385036 95 ntBASIC-3.19□□□□□ -2.92
NUP98P52948 RNU6-402P-201ENST00000410678 103 ntBASIC-3.19□□□□□ -2.92
NUP98P52948 AL451105.1-201ENST00000450005 189 ntBASIC-3.19□□□□□ -2.92
NUP98P52948 MIR590-201ENST00000385008 97 ntBASIC-3.2□□□□□ -2.92
NUP98P52948 RNU6-92P-201ENST00000605893 104 ntBASIC-3.2□□□□□ -2.92
NUP98P52948 AC004792.1-201ENST00000614523 137 ntBASIC-3.2□□□□□ -2.92
NUP98P52948 SNORA63-201ENST00000363450 132 ntBASIC-3.21□□□□□ -2.92
NUP98P52948 RNU6-196P-201ENST00000384315 107 ntBASIC-3.21□□□□□ -2.92
NUP98P52948 MIR656-201ENST00000385224 78 ntBASIC-3.21□□□□□ -2.92
NUP98P52948 RNA5SP224-201ENST00000365069 126 ntBASIC-3.22□□□□□ -2.93
NUP98P52948 SNORD116-22-201ENST00000384430 92 ntBASIC-3.22□□□□□ -2.93
NUP98P52948 SNORD45A-201ENST00000384512 84 ntBASIC-3.22□□□□□ -2.93
NUP98P52948 RNU6-557P-201ENST00000516842 110 ntBASIC-3.22□□□□□ -2.93
NUP98P52948 SNORD60.1-201ENST00000362451 73 ntBASIC-3.23□□□□□ -2.93
NUP98P52948 Y_RNA.489-201ENST00000384410 101 ntBASIC-3.23□□□□□ -2.93
NUP98P52948 RNU6-1340P-201ENST00000384438 107 ntBASIC-3.23□□□□□ -2.93
NUP98P52948 MIR4801-201ENST00000582704 82 ntBASIC-3.23□□□□□ -2.93
NUP98P52948 U6.95-201ENST00000636931 70 ntBASIC-3.23□□□□□ -2.93
NUP98P52948 RNU6-1124P-201ENST00000384169 107 ntBASIC-3.24□□□□□ -2.93
NUP98P52948 RNU6-804P-201ENST00000384286 107 ntBASIC-3.24□□□□□ -2.93
NUP98P52948 RNU6-789P-201ENST00000517105 102 ntBASIC-3.24□□□□□ -2.93
NUP98P52948 MIR2052-201ENST00000636055 55 ntBASIC-3.24□□□□□ -2.93
NUP98P52948 SNORD45C-201ENST00000383893 79 ntBASIC-3.26□□□□□ -2.93
NUP98P52948 RNU6-257P-201ENST00000410238 98 ntBASIC-3.26□□□□□ -2.93
NUP98P52948 MTATP8P2-201ENST00000435212 202 ntBASIC-3.26□□□□□ -2.93
NUP98P52948 RNU6-854P-201ENST00000364036 107 ntBASIC-3.27□□□□□ -2.93
NUP98P52948 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-3.27□□□□□ -2.93
NUP98P52948 Y_RNA.712-201ENST00000517011 92 ntBASIC-3.27□□□□□ -2.93
NUP98P52948 MIR1302-5-201ENST00000408164 150 ntBASIC-3.28□□□□□ -2.93
NUP98P52948 RNU6-419P-201ENST00000517030 63 ntBASIC-3.28□□□□□ -2.94
NUP98P52948 RNU6-231P-201ENST00000517122 103 ntBASIC-3.28□□□□□ -2.94
NUP98P52948 MIR4317-201ENST00000637586 65 ntBASIC-3.28□□□□□ -2.94
NUP98P52948 Y_RNA.193-201ENST00000363979 102 ntBASIC-3.29□□□□□ -2.94
NUP98P52948 RNU6-200P-201ENST00000364743 107 ntBASIC-3.29□□□□□ -2.94
NUP98P52948 SNORD116-21-201ENST00000384507 92 ntBASIC-3.29□□□□□ -2.94
NUP98P52948 RNU6-686P-201ENST00000364839 107 ntBASIC-3.3□□□□□ -2.94
NUP98P52948 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-3.3□□□□□ -2.94
NUP98P52948 MIR548AI-201ENST00000579940 88 ntBASIC-3.3□□□□□ -2.94
NUP98P52948 MIR4668-201ENST00000582284 70 ntBASIC-3.3□□□□□ -2.94
NUP98P52948 Y_RNA.620-201ENST00000411009 88 ntBASIC-3.3□□□□□ -2.94
NUP98P52948 MTND5P41-201ENST00000517498 206 ntBASIC-3.3□□□□□ -2.94
NUP98P52948 RNU6-1015P-201ENST00000517121 99 ntBASIC-3.31□□□□□ -2.94
NUP98P52948 SNORA40.16-201ENST00000517238 121 ntBASIC-3.31□□□□□ -2.94
NUP98P52948 MIR664A-201ENST00000626086 82 ntBASIC-3.31□□□□□ -2.94
NUP98P52948 MIRLET7A1-201ENST00000362295 80 ntBASIC-3.32□□□□□ -2.94
NUP98P52948 Y_RNA.532-201ENST00000384590 113 ntBASIC-3.32□□□□□ -2.94
NUP98P52948 RNU6-380P-201ENST00000410207 107 ntBASIC-3.32□□□□□ -2.94
NUP98P52948 Y_RNA.290-201ENST00000364879 114 ntBASIC-3.33□□□□□ -2.94
NUP98P52948 MIR154-201ENST00000385243 84 ntBASIC-3.33□□□□□ -2.94
NUP98P52948 TMSB4XP3-201ENST00000445144 114 ntBASIC-3.33□□□□□ -2.94
NUP98P52948 Y_RNA.709-201ENST00000516952 92 ntBASIC-3.33□□□□□ -2.94
NUP98P52948 AC006160.2-201ENST00000637708 154 ntBASIC-3.33□□□□□ -2.94
NUP98P52948 SNORA19-201ENST00000384737 128 ntBASIC-3.34□□□□□ -2.94
NUP98P52948 AC139453.2-201ENST00000487255 133 ntBASIC-3.34□□□□□ -2.94
NUP98P52948 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-3.34□□□□□ -2.94
NUP98P52948 SNORA63.4-201ENST00000362763 126 ntBASIC-3.35□□□□□ -2.95
NUP98P52948 SNORA25.5-201ENST00000363782 126 ntBASIC-3.35□□□□□ -2.95
NUP98P52948 RNU6-659P-201ENST00000516454 104 ntBASIC-3.35□□□□□ -2.95
NUP98P52948 RNU7-119P-201ENST00000459279 63 ntBASIC-3.35□□□□□ -2.95
NUP98P52948 Y_RNA.218-201ENST00000364218 104 ntBASIC-3.36□□□□□ -2.95
NUP98P52948 Y_RNA.219-201ENST00000364232 113 ntBASIC-3.36□□□□□ -2.95
NUP98P52948 SNORD116-24-201ENST00000384549 92 ntBASIC-3.37□□□□□ -2.95
NUP98P52948 RNU6-379P-201ENST00000363813 104 ntBASIC-3.39□□□□□ -2.95
NUP98P52948 MIR548AH-201ENST00000637109 76 ntBASIC-3.39□□□□□ -2.95
NUP98P52948 RNU6-836P-201ENST00000362920 107 ntBASIC-3.4□□□□□ -2.95
NUP98P52948 RNU6-109P-201ENST00000516364 107 ntBASIC-3.4□□□□□ -2.95
NUP98P52948 RNU6-184P-201ENST00000516514 107 ntBASIC-3.4□□□□□ -2.95
NUP98P52948 RNU6-788P-201ENST00000390967 104 ntBASIC-3.41□□□□□ -2.96
NUP98P52948 Y_RNA.611-201ENST00000410682 108 ntBASIC-3.42□□□□□ -2.96
NUP98P52948 Y_RNA.544-201ENST00000384650 113 ntBASIC-3.43□□□□□ -2.96
NUP98P52948 Y_RNA.607-201ENST00000410597 98 ntBASIC-3.43□□□□□ -2.96
Retrieved 100 of 98,524 protein–RNA pairs in 270.5 ms