Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MIR8053-201ENST00000613344 75 ntBASIC-1.78□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.78□□□□□ -2.69
CHD9Q3L8U1 RNU6-639P-201ENST00000384074 107 ntBASIC-1.78□□□□□ -2.69
CHD9Q3L8U1 RNU6-974P-201ENST00000384099 108 ntBASIC-1.78□□□□□ -2.69
CHD9Q3L8U1 SNORD63.2-201ENST00000516303 64 ntBASIC-1.78□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.79□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.79□□□□□ -2.7
CHD9Q3L8U1 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.79□□□□□ -2.7
CHD9Q3L8U1 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-1.79□□□□□ -2.7
CHD9Q3L8U1 RNU6-912P-201ENST00000363800 104 ntBASIC-1.79□□□□□ -2.7
CHD9Q3L8U1 AC072026.1-201ENST00000605023 201 ntBASIC-1.79□□□□□ -2.7
CHD9Q3L8U1 MIR202-201ENST00000362219 110 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 RNU6-598P-201ENST00000364017 105 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 RNU6-1318P-201ENST00000365389 103 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.459-201ENST00000384251 102 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 MIR519C-201ENST00000385053 87 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 MIR579-201ENST00000385221 98 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 MIR4694-201ENST00000578534 80 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 MIR3675-201ENST00000583661 73 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 MIR548V-201ENST00000584165 80 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 RNU6-800P-201ENST00000384473 103 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 RNU7-153P-201ENST00000516455 62 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 MIR581-201ENST00000384895 96 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 AP001340.1-201ENST00000624405 217 ntBASIC-1.8□□□□□ -2.7
CHD9Q3L8U1 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.81□□□□□ -2.7
CHD9Q3L8U1 AC103810.7-201ENST00000607821 91 ntBASIC-1.81□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.478-201ENST00000384358 107 ntBASIC-1.81□□□□□ -2.7
CHD9Q3L8U1 RNU6-876P-201ENST00000391295 104 ntBASIC-1.82□□□□□ -2.7
CHD9Q3L8U1 RNU6-345P-201ENST00000517001 107 ntBASIC-1.82□□□□□ -2.7
CHD9Q3L8U1 RNU6-303P-201ENST00000517091 106 ntBASIC-1.82□□□□□ -2.7
CHD9Q3L8U1 MIR7978-201ENST00000636158 59 ntBASIC-1.82□□□□□ -2.7
CHD9Q3L8U1 MIR8062-201ENST00000621515 85 ntBASIC-1.82□□□□□ -2.7
CHD9Q3L8U1 SNORD45.1-201ENST00000363181 77 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 RNA5SP215-201ENST00000363440 122 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 SNORD42.2-201ENST00000365570 69 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.395-201ENST00000383945 109 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 SNORA41B-201ENST00000384785 128 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.579-201ENST00000390939 94 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 RNU6-755P-201ENST00000364400 103 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 RNU6-828P-201ENST00000364876 107 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 SNORD115-31-201ENST00000365318 82 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 RNU6-875P-201ENST00000516488 106 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.688-201ENST00000516565 95 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-1.83□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.84□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.84□□□□□ -2.7
CHD9Q3L8U1 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.84□□□□□ -2.7
CHD9Q3L8U1 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.84□□□□□ -2.7
CHD9Q3L8U1 MIR4760-201ENST00000585040 80 ntBASIC-1.84□□□□□ -2.7
CHD9Q3L8U1 RNU6-361P-201ENST00000364454 107 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 MT-TD-201ENST00000387419 68 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 RNU6-604P-201ENST00000390917 100 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 SCARNA23-201ENST00000516060 130 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 Y_RNA.11-201ENST00000362375 109 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 RNU6-542P-201ENST00000516405 103 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 AC139792.2-201ENST00000624218 587 ntBASIC-1.85□□□□□ -2.71
CHD9Q3L8U1 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.86□□□□□ -2.71
CHD9Q3L8U1 RNU6-985P-201ENST00000410182 104 ntBASIC-1.86□□□□□ -2.71
CHD9Q3L8U1 RNU6-554P-201ENST00000410466 106 ntBASIC-1.86□□□□□ -2.71
CHD9Q3L8U1 RNU6-795P-201ENST00000516323 103 ntBASIC-1.86□□□□□ -2.71
CHD9Q3L8U1 MIR4796-201ENST00000580742 81 ntBASIC-1.86□□□□□ -2.71
CHD9Q3L8U1 AC134503.1-201ENST00000633048 54 ntBASIC-1.86□□□□□ -2.71
CHD9Q3L8U1 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.86□□□□□ -2.71
CHD9Q3L8U1 MIR4680-201ENST00000580906 66 ntBASIC-1.86□□□□□ -2.71
CHD9Q3L8U1 RNU6-587P-201ENST00000391282 106 ntBASIC-1.87□□□□□ -2.71
CHD9Q3L8U1 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.87□□□□□ -2.71
CHD9Q3L8U1 RNU6-887P-201ENST00000410660 100 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 MIR369-201ENST00000362155 70 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 Y_RNA.47-201ENST00000362697 108 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 Y_RNA.160-201ENST00000363677 92 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 RNU6-904P-201ENST00000516206 101 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 Y_RNA.516-201ENST00000384541 124 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 RNU6-772P-201ENST00000516042 105 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 RNU6-1137P-201ENST00000517073 99 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 RNU6-92P-201ENST00000605893 104 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 MIR1302-1-201ENST00000637932 143 ntBASIC-1.88□□□□□ -2.71
CHD9Q3L8U1 RNU6-737P-201ENST00000365370 107 ntBASIC-1.89□□□□□ -2.71
CHD9Q3L8U1 Y_RNA.626-201ENST00000411288 95 ntBASIC-1.89□□□□□ -2.71
CHD9Q3L8U1 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.89□□□□□ -2.71
CHD9Q3L8U1 MIR1297-201ENST00000637311 77 ntBASIC-1.9□□□□□ -2.71
CHD9Q3L8U1 RNU6-623P-201ENST00000363143 105 ntBASIC-1.9□□□□□ -2.71
CHD9Q3L8U1 SNORA33.2-201ENST00000365413 134 ntBASIC-1.9□□□□□ -2.71
CHD9Q3L8U1 RNU6-1219P-201ENST00000516143 112 ntBASIC-1.9□□□□□ -2.71
CHD9Q3L8U1 Y_RNA.20-201ENST00000362479 113 ntBASIC-1.91□□□□□ -2.71
CHD9Q3L8U1 Y_RNA.662-201ENST00000516028 97 ntBASIC-1.91□□□□□ -2.71
CHD9Q3L8U1 RNU6-916P-201ENST00000516088 109 ntBASIC-1.91□□□□□ -2.71
CHD9Q3L8U1 RNU7-160P-201ENST00000516660 62 ntBASIC-1.91□□□□□ -2.71
CHD9Q3L8U1 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.91□□□□□ -2.72
CHD9Q3L8U1 Y_RNA.200-201ENST00000364018 102 ntBASIC-1.91□□□□□ -2.72
CHD9Q3L8U1 MIR548F1-201ENST00000408667 84 ntBASIC-1.91□□□□□ -2.72
CHD9Q3L8U1 MIR3908-201ENST00000579798 126 ntBASIC-1.91□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 464.8 ms