Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 RNU6-158P-201ENST00000517104 100 ntBASIC-1.22□□□□□ -2.6
HLA-DQA1P01909 RNU6-706P-201ENST00000517229 104 ntBASIC-1.22□□□□□ -2.6
HLA-DQA1P01909 MIR3668-201ENST00000582138 75 ntBASIC-1.22□□□□□ -2.6
HLA-DQA1P01909 RNU6-598P-201ENST00000364017 105 ntBASIC-1.23□□□□□ -2.61
HLA-DQA1P01909 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.23□□□□□ -2.61
HLA-DQA1P01909 RNU6-587P-201ENST00000391282 106 ntBASIC-1.23□□□□□ -2.61
HLA-DQA1P01909 AC093729.1-201ENST00000513074 128 ntBASIC-1.23□□□□□ -2.61
HLA-DQA1P01909 MIR4520-1-201ENST00000582609 70 ntBASIC-1.23□□□□□ -2.61
HLA-DQA1P01909 U4.4-201ENST00000620626 117 ntBASIC-1.23□□□□□ -2.61
HLA-DQA1P01909 RNU6-834P-201ENST00000362367 110 ntBASIC-1.24□□□□□ -2.61
HLA-DQA1P01909 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.24□□□□□ -2.61
HLA-DQA1P01909 RNU6-608P-201ENST00000383927 104 ntBASIC-1.24□□□□□ -2.61
HLA-DQA1P01909 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.24□□□□□ -2.61
HLA-DQA1P01909 MT-TR-201ENST00000387439 65 ntBASIC-1.24□□□□□ -2.61
HLA-DQA1P01909 RNU6-604P-201ENST00000390917 100 ntBASIC-1.24□□□□□ -2.61
HLA-DQA1P01909 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.24□□□□□ -2.61
HLA-DQA1P01909 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.24□□□□□ -2.61
HLA-DQA1P01909 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.24□□□□□ -2.61
HLA-DQA1P01909 MIR4490-201ENST00000582647 84 ntBASIC-1.24□□□□□ -2.61
HLA-DQA1P01909 MIR450A1-201ENST00000362262 91 ntBASIC-1.25□□□□□ -2.61
HLA-DQA1P01909 RNA5SP192-201ENST00000364404 120 ntBASIC-1.25□□□□□ -2.61
HLA-DQA1P01909 RNU6-22P-201ENST00000384355 107 ntBASIC-1.25□□□□□ -2.61
HLA-DQA1P01909 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.25□□□□□ -2.61
HLA-DQA1P01909 RNU6-402P-201ENST00000410678 103 ntBASIC-1.25□□□□□ -2.61
HLA-DQA1P01909 AC074348.1-201ENST00000426503 132 ntBASIC-1.25□□□□□ -2.61
HLA-DQA1P01909 RNU6-168P-201ENST00000516189 101 ntBASIC-1.25□□□□□ -2.61
HLA-DQA1P01909 MIR3675-201ENST00000583661 73 ntBASIC-1.25□□□□□ -2.61
HLA-DQA1P01909 MIR2052-201ENST00000636055 55 ntBASIC-1.25□□□□□ -2.61
HLA-DQA1P01909 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.26□□□□□ -2.61
HLA-DQA1P01909 RNU6-10P-201ENST00000384036 107 ntBASIC-1.26□□□□□ -2.61
HLA-DQA1P01909 RNU6-630P-201ENST00000391258 106 ntBASIC-1.26□□□□□ -2.61
HLA-DQA1P01909 MIR548BB-201ENST00000626714 66 ntBASIC-1.26□□□□□ -2.61
HLA-DQA1P01909 SNORD45.1-201ENST00000363181 77 ntBASIC-1.27□□□□□ -2.61
HLA-DQA1P01909 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.27□□□□□ -2.61
HLA-DQA1P01909 SNORA8.1-201ENST00000384250 140 ntBASIC-1.27□□□□□ -2.61
HLA-DQA1P01909 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.27□□□□□ -2.61
HLA-DQA1P01909 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.27□□□□□ -2.61
HLA-DQA1P01909 AL031737.1-201ENST00000450125 223 ntBASIC-1.27□□□□□ -2.61
HLA-DQA1P01909 MIR5591-201ENST00000578248 65 ntBASIC-1.27□□□□□ -2.61
HLA-DQA1P01909 U2.18-201ENST00000622185 84 ntBASIC-1.27□□□□□ -2.61
HLA-DQA1P01909 SNORD116-22-201ENST00000384430 92 ntBASIC-1.28□□□□□ -2.61
HLA-DQA1P01909 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.28□□□□□ -2.61
HLA-DQA1P01909 RNU6-696P-201ENST00000390834 107 ntBASIC-1.28□□□□□ -2.61
HLA-DQA1P01909 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.28□□□□□ -2.61
HLA-DQA1P01909 HLA-S-202ENST00000425174 53 ntBASIC-1.28□□□□□ -2.61
HLA-DQA1P01909 SNORD57-201ENST00000448188 72 ntBASIC-1.28□□□□□ -2.61
HLA-DQA1P01909 RNU6-557P-201ENST00000516842 110 ntBASIC-1.28□□□□□ -2.61
HLA-DQA1P01909 RNU6-303P-201ENST00000517091 106 ntBASIC-1.28□□□□□ -2.61
HLA-DQA1P01909 AC138207.3-201ENST00000585289 166 ntBASIC-1.28□□□□□ -2.61
HLA-DQA1P01909 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.29□□□□□ -2.62
HLA-DQA1P01909 RNA5SP266-201ENST00000410273 108 ntBASIC-1.29□□□□□ -2.62
HLA-DQA1P01909 MIR3165-201ENST00000579874 75 ntBASIC-1.29□□□□□ -2.62
HLA-DQA1P01909 MIR4484-201ENST00000582855 83 ntBASIC-1.29□□□□□ -2.62
HLA-DQA1P01909 AP001318.4-201ENST00000616637 121 ntBASIC-1.29□□□□□ -2.62
HLA-DQA1P01909 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.3□□□□□ -2.62
HLA-DQA1P01909 MIR488-201ENST00000365739 83 ntBASIC-1.3□□□□□ -2.62
HLA-DQA1P01909 MALAT1.1-201ENST00000618249 95 ntBASIC-1.3□□□□□ -2.62
HLA-DQA1P01909 RNU6-226P-201ENST00000363778 107 ntBASIC-1.31□□□□□ -2.62
HLA-DQA1P01909 RNU6-686P-201ENST00000364839 107 ntBASIC-1.31□□□□□ -2.62
HLA-DQA1P01909 MIR630-201ENST00000384957 97 ntBASIC-1.31□□□□□ -2.62
HLA-DQA1P01909 MIR548M-201ENST00000408260 86 ntBASIC-1.31□□□□□ -2.62
HLA-DQA1P01909 MIR548V-201ENST00000584165 80 ntBASIC-1.31□□□□□ -2.62
HLA-DQA1P01909 MIR664A-201ENST00000626086 82 ntBASIC-1.31□□□□□ -2.62
HLA-DQA1P01909 RNU6-79P-201ENST00000362511 107 ntBASIC-1.32□□□□□ -2.62
HLA-DQA1P01909 RNU6-698P-201ENST00000363523 107 ntBASIC-1.32□□□□□ -2.62
HLA-DQA1P01909 RNU6-34P-201ENST00000364874 107 ntBASIC-1.32□□□□□ -2.62
HLA-DQA1P01909 RNY4P18-201ENST00000391107 89 ntBASIC-1.32□□□□□ -2.62
HLA-DQA1P01909 SNORA40.13-201ENST00000516379 120 ntBASIC-1.32□□□□□ -2.62
HLA-DQA1P01909 RNU6-258P-201ENST00000390884 101 ntBASIC-1.33□□□□□ -2.62
HLA-DQA1P01909 SNORD113-2-201ENST00000391082 72 ntBASIC-1.33□□□□□ -2.62
HLA-DQA1P01909 SNORA41B-201ENST00000384785 128 ntBASIC-1.34□□□□□ -2.62
HLA-DQA1P01909 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.34□□□□□ -2.62
HLA-DQA1P01909 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.34□□□□□ -2.62
HLA-DQA1P01909 AC018880.2-201ENST00000414265 201 ntBASIC-1.34□□□□□ -2.62
HLA-DQA1P01909 RNU6-313P-201ENST00000516317 112 ntBASIC-1.34□□□□□ -2.62
HLA-DQA1P01909 MIR4770-201ENST00000579149 58 ntBASIC-1.34□□□□□ -2.62
HLA-DQA1P01909 RNU6-563P-201ENST00000364872 108 ntBASIC-1.35□□□□□ -2.63
HLA-DQA1P01909 RNA5SP86-201ENST00000390869 98 ntBASIC-1.35□□□□□ -2.63
HLA-DQA1P01909 RNU6-129P-201ENST00000391022 107 ntBASIC-1.35□□□□□ -2.63
HLA-DQA1P01909 MIR3170-201ENST00000582699 77 ntBASIC-1.35□□□□□ -2.63
HLA-DQA1P01909 MIR4320-201ENST00000636981 65 ntBASIC-1.35□□□□□ -2.63
HLA-DQA1P01909 RNU6-640P-201ENST00000363693 105 ntBASIC-1.36□□□□□ -2.63
HLA-DQA1P01909 AC006160.2-201ENST00000637708 154 ntBASIC-1.36□□□□□ -2.63
HLA-DQA1P01909 SNORD113.1-201ENST00000363280 73 ntBASIC-1.37□□□□□ -2.63
HLA-DQA1P01909 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.37□□□□□ -2.63
HLA-DQA1P01909 SNORD45A-201ENST00000384512 84 ntBASIC-1.37□□□□□ -2.63
HLA-DQA1P01909 MIR487B-201ENST00000385021 84 ntBASIC-1.37□□□□□ -2.63
HLA-DQA1P01909 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.37□□□□□ -2.63
HLA-DQA1P01909 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.39□□□□□ -2.63
HLA-DQA1P01909 RNU6-675P-201ENST00000384236 104 ntBASIC-1.39□□□□□ -2.63
HLA-DQA1P01909 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.4□□□□□ -2.63
HLA-DQA1P01909 SNORD1B-201ENST00000363091 84 ntBASIC-1.4□□□□□ -2.63
HLA-DQA1P01909 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.4□□□□□ -2.63
HLA-DQA1P01909 MIR3910-1-201ENST00000580936 111 ntBASIC-1.4□□□□□ -2.63
HLA-DQA1P01909 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.41□□□□□ -2.64
HLA-DQA1P01909 SNORD116-16-201ENST00000384533 92 ntBASIC-1.41□□□□□ -2.64
HLA-DQA1P01909 RNU6-400P-201ENST00000391173 106 ntBASIC-1.41□□□□□ -2.64
HLA-DQA1P01909 MIR548H1-201ENST00000408610 102 ntBASIC-1.41□□□□□ -2.64
HLA-DQA1P01909 AC120024.2-201ENST00000576526 175 ntBASIC-1.41□□□□□ -2.64
HLA-DQA1P01909 RNU6-668P-201ENST00000364180 107 ntBASIC-1.42□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 219.5 ms