Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 UBC-206ENST00000538617 1303 ntTSL 5 BASIC25.7■■□□□ 1.71
CCDC61Q9Y6R9 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 TOB2P1-201ENST00000469761 992 ntBASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 AP000867.3-201ENST00000524675 377 ntBASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 AC012615.1-201ENST00000565797 1299 ntBASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 AL732292.2-201ENST00000609649 430 ntBASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC61Q9Y6R9 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 AP003733.1-201ENST00000491725 852 ntBASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 AC090616.6-201ENST00000582640 721 ntBASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 KRT8P10-201ENST00000450021 1447 ntBASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC25.69■■□□□ 1.7
CCDC61Q9Y6R9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 FP475955.4-201ENST00000623131 1990 ntBASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 PNN-202ENST00000553331 656 ntTSL 3 BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC25.68■■□□□ 1.7
CCDC61Q9Y6R9 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 PBK-203ENST00000522944 1499 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 AL121772.3-201ENST00000610840 674 ntBASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 AC141586.3-201ENST00000562166 1838 ntBASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC61Q9Y6R9 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 CLDN5-201ENST00000403084 2357 ntBASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 EMBP1-201ENST00000458200 901 ntBASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 AC068587.9-201ENST00000641814 219 ntBASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC61Q9Y6R9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC25.66■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms