Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 SLC25A6P4-201ENST00000586535 553 ntBASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PCDHGA1Q9Y5H4 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 AL121912.1-201ENST00000603683 238 ntBASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PCDHGA1Q9Y5H4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 Z83836.1-201ENST00000624605 1642 ntBASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDHGA1Q9Y5H4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 AC104390.1-201ENST00000555663 520 ntBASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms