Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 AK4P3-201ENST00000418260 669 ntBASIC17.81■□□□□ 0.44
SCN3AQ9NY46 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 ANO7L1-203ENST00000602586 1720 ntBASIC17.81■□□□□ 0.44
SCN3AQ9NY46 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 AC092338.2-201ENST00000568827 1415 ntBASIC17.8■□□□□ 0.44
SCN3AQ9NY46 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 CR769767.2-201ENST00000622735 460 ntBASIC17.8■□□□□ 0.44
SCN3AQ9NY46 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 CROCCP3-202ENST00000420820 1947 ntBASIC17.8■□□□□ 0.44
SCN3AQ9NY46 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.8■□□□□ 0.44
SCN3AQ9NY46 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 KRT8P45-201ENST00000414328 1447 ntBASIC17.8■□□□□ 0.44
SCN3AQ9NY46 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.8■□□□□ 0.44
SCN3AQ9NY46 AC005082.1-201ENST00000413042 2259 ntBASIC17.8■□□□□ 0.44
SCN3AQ9NY46 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 SLC25A1P2-201ENST00000430693 912 ntBASIC17.79■□□□□ 0.44
SCN3AQ9NY46 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 YBX1P2-201ENST00000489612 999 ntBASIC17.79■□□□□ 0.44
SCN3AQ9NY46 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN3AQ9NY46 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 AL499627.1-201ENST00000569373 2188 ntBASIC17.78■□□□□ 0.44
SCN3AQ9NY46 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 TMPOP1-202ENST00000424642 1267 ntBASIC17.78■□□□□ 0.44
SCN3AQ9NY46 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 WWOX-216ENST00000569818 525 ntBASIC17.78■□□□□ 0.44
SCN3AQ9NY46 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN3AQ9NY46 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms