Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCX3AQ9NNX9 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCX3AQ9NNX9 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCX3AQ9NNX9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCX3AQ9NNX9 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCX3AQ9NNX9 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCX3AQ9NNX9 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCX3AQ9NNX9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.6■□□□□ 0.41
VCX3AQ9NNX9 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCX3AQ9NNX9 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 MIR3621-201ENST00000580529 85 ntBASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 AC126544.1-201ENST00000580842 1059 ntBASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCX3AQ9NNX9 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
VCX3AQ9NNX9 IRX1P1-201ENST00000438849 1838 ntBASIC17.58■□□□□ 0.41
VCX3AQ9NNX9 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCX3AQ9NNX9 AC011676.5-201ENST00000624864 2660 ntBASIC17.58■□□□□ 0.41
VCX3AQ9NNX9 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCX3AQ9NNX9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
VCX3AQ9NNX9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCX3AQ9NNX9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
VCX3AQ9NNX9 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.58■□□□□ 0.41
VCX3AQ9NNX9 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCX3AQ9NNX9 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 AL358852.1-201ENST00000623174 1268 ntBASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
VCX3AQ9NNX9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 AL031963.3-201ENST00000606441 850 ntBASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 AL356652.1-201ENST00000615962 565 ntBASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms