Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 AP001271.2-201ENST00000624018 1556 ntBASIC16.61■□□□□ 0.25
VRK1Q99986 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.61■□□□□ 0.25
VRK1Q99986 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
VRK1Q99986 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.61■□□□□ 0.25
VRK1Q99986 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC16.61■□□□□ 0.25
VRK1Q99986 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.61■□□□□ 0.25
VRK1Q99986 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.61■□□□□ 0.25
VRK1Q99986 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
VRK1Q99986 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VRK1Q99986 FSCN1P1-201ENST00000568912 1481 ntBASIC16.61■□□□□ 0.25
VRK1Q99986 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VRK1Q99986 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
VRK1Q99986 FZD10-202ENST00000539839 3282 ntBASIC16.6■□□□□ 0.25
VRK1Q99986 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VRK1Q99986 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.6■□□□□ 0.25
VRK1Q99986 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.6■□□□□ 0.25
VRK1Q99986 AL390955.1-201ENST00000428694 934 ntBASIC16.6■□□□□ 0.25
VRK1Q99986 AC116562.2-201ENST00000507042 360 ntBASIC16.6■□□□□ 0.25
VRK1Q99986 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.6■□□□□ 0.25
VRK1Q99986 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 AL445675.2-201ENST00000620291 557 ntBASIC16.6■□□□□ 0.25
VRK1Q99986 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
VRK1Q99986 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VRK1Q99986 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VRK1Q99986 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.6■□□□□ 0.25
VRK1Q99986 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VRK1Q99986 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.59■□□□□ 0.25
VRK1Q99986 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VRK1Q99986 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK1Q99986 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VRK1Q99986 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK1Q99986 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VRK1Q99986 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
VRK1Q99986 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.59■□□□□ 0.25
VRK1Q99986 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.59■□□□□ 0.25
VRK1Q99986 FAM210CP-201ENST00000445714 574 ntBASIC16.59■□□□□ 0.25
VRK1Q99986 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK1Q99986 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VRK1Q99986 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK1Q99986 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.59■□□□□ 0.25
VRK1Q99986 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.59■□□□□ 0.25
VRK1Q99986 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.59■□□□□ 0.25
VRK1Q99986 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.59■□□□□ 0.25
VRK1Q99986 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VRK1Q99986 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.59■□□□□ 0.25
VRK1Q99986 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 TREX1-205ENST00000625293 1783 ntBASIC16.59■□□□□ 0.25
VRK1Q99986 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VRK1Q99986 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.59■□□□□ 0.25
VRK1Q99986 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
VRK1Q99986 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VRK1Q99986 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VRK1Q99986 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VRK1Q99986 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK1Q99986 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK1Q99986 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.58■□□□□ 0.24
VRK1Q99986 MIR6786-201ENST00000616843 113 ntBASIC16.58■□□□□ 0.24
VRK1Q99986 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.58■□□□□ 0.24
VRK1Q99986 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VRK1Q99986 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VRK1Q99986 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK1Q99986 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
VRK1Q99986 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK1Q99986 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK1Q99986 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC16.58■□□□□ 0.24
VRK1Q99986 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VRK1Q99986 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VRK1Q99986 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms