Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS35Q96QK1 AL512604.3-201ENST00000569583 964 ntBASIC18.67■□□□□ 0.58
VPS35Q96QK1 MIR4674-201ENST00000582457 87 ntBASIC18.67■□□□□ 0.58
VPS35Q96QK1 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
VPS35Q96QK1 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 AC005363.2-201ENST00000618631 242 ntBASIC18.67■□□□□ 0.58
VPS35Q96QK1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS35Q96QK1 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS35Q96QK1 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS35Q96QK1 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS35Q96QK1 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
VPS35Q96QK1 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 GPAT2P1-201ENST00000444924 1672 ntBASIC18.66■□□□□ 0.58
VPS35Q96QK1 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 AL023284.2-201ENST00000405850 579 ntBASIC18.66■□□□□ 0.58
VPS35Q96QK1 AC113347.1-201ENST00000413321 391 ntBASIC18.66■□□□□ 0.58
VPS35Q96QK1 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS35Q96QK1 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VPS35Q96QK1 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS35Q96QK1 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
VPS35Q96QK1 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
VPS35Q96QK1 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS35Q96QK1 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS35Q96QK1 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS35Q96QK1 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 AL109659.2-201ENST00000606809 1674 ntBASIC18.65■□□□□ 0.58
VPS35Q96QK1 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS35Q96QK1 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS35Q96QK1 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS35Q96QK1 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
VPS35Q96QK1 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS35Q96QK1 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
VPS35Q96QK1 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
VPS35Q96QK1 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
VPS35Q96QK1 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS35Q96QK1 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 MCCD1P1-208ENST00000445732 328 ntBASIC18.64■□□□□ 0.57
VPS35Q96QK1 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 AC083906.6-201ENST00000641366 219 ntBASIC18.64■□□□□ 0.57
VPS35Q96QK1 AC068587.9-201ENST00000641814 219 ntBASIC18.64■□□□□ 0.57
VPS35Q96QK1 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms