Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 AC008622.2-201ENST00000617006 1229 ntBASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD1Q96NR3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 AL161938.1-201ENST00000569833 2180 ntBASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 TERF1P1-201ENST00000311003 1181 ntBASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 HCG11-201ENST00000411553 5696 ntBASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD1Q96NR3 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 RCN1P1-201ENST00000400413 996 ntBASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 AC010203.1-204ENST00000548782 407 ntBASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 BX323043.1-201ENST00000641006 1765 ntBASIC17.71■□□□□ 0.43
PTCHD1Q96NR3 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
PTCHD1Q96NR3 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.71■□□□□ 0.42
PTCHD1Q96NR3 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD1Q96NR3 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms