Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 Z85996.1-201ENST00000494644 937 ntBASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 AC006058.3-201ENST00000606217 1069 ntBASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 AC073648.6-201ENST00000641589 218 ntBASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CLHC1Q8NHS4 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLHC1Q8NHS4 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 AC135050.7-201ENST00000624508 2218 ntBASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLHC1Q8NHS4 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 AC126763.1-201ENST00000552015 2118 ntBASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 AL390961.4-201ENST00000623958 2535 ntBASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLHC1Q8NHS4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms