Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SMC1BQ8NDV3 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMC1BQ8NDV3 ANKRD18DP-204ENST00000455355 1975 ntBASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 AC211486.1-202ENST00000416371 468 ntBASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 AC004832.2-201ENST00000426397 482 ntBASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 AP006288.1-201ENST00000446065 395 ntBASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 FGFR3P6-201ENST00000457012 610 ntBASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 AC211476.1-201ENST00000503899 468 ntBASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 AC114341.1-201ENST00000618070 349 ntBASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 PLK5-205ENST00000642079 1969 ntBASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 AC092720.2-201ENST00000602388 1665 ntBASIC22.3■■□□□ 1.16
SMC1BQ8NDV3 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 Z98882.1-201ENST00000622160 2253 ntBASIC22.29■■□□□ 1.16
SMC1BQ8NDV3 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 AC010240.3-201ENST00000607688 395 ntBASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 Z83851.2-201ENST00000609564 659 ntBASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 FEM1AP1-201ENST00000431297 1995 ntBASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMC1BQ8NDV3 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms