Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 AC106795.1-205ENST00000512851 1056 ntBASIC18.07■□□□□ 0.48
COL28A1Q2UY09 AP002469.2-201ENST00000531724 424 ntBASIC18.07■□□□□ 0.48
COL28A1Q2UY09 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 LINC02084-201ENST00000606069 1096 ntBASIC18.07■□□□□ 0.48
COL28A1Q2UY09 AL121672.3-201ENST00000608644 468 ntBASIC18.07■□□□□ 0.48
COL28A1Q2UY09 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.07■□□□□ 0.48
COL28A1Q2UY09 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 AC016734.2-201ENST00000624325 1377 ntBASIC18.06■□□□□ 0.48
COL28A1Q2UY09 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 MIR1233-2-201ENST00000408138 82 ntBASIC18.06■□□□□ 0.48
COL28A1Q2UY09 MIR1233-1-201ENST00000408722 82 ntBASIC18.06■□□□□ 0.48
COL28A1Q2UY09 TSPY19P-201ENST00000418461 509 ntBASIC18.06■□□□□ 0.48
COL28A1Q2UY09 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 PMS2P1-201ENST00000431037 1228 ntBASIC18.06■□□□□ 0.48
COL28A1Q2UY09 TSPY18P-201ENST00000441642 509 ntBASIC18.06■□□□□ 0.48
COL28A1Q2UY09 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 AL662844.1-201ENST00000546340 181 ntBASIC18.06■□□□□ 0.48
COL28A1Q2UY09 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.06■□□□□ 0.48
COL28A1Q2UY09 AC138932.1-201ENST00000534164 6830 ntBASIC18.06■□□□□ 0.48
COL28A1Q2UY09 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 KRT18P1-202ENST00000452408 1331 ntBASIC18.05■□□□□ 0.48
COL28A1Q2UY09 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 AP002383.4-201ENST00000442518 975 ntBASIC18.05■□□□□ 0.48
COL28A1Q2UY09 CA15P1-201ENST00000481698 905 ntBASIC18.05■□□□□ 0.48
COL28A1Q2UY09 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 AC091304.2-201ENST00000564639 760 ntBASIC18.05■□□□□ 0.48
COL28A1Q2UY09 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 AC018553.1-201ENST00000616682 1458 ntBASIC18.05■□□□□ 0.48
COL28A1Q2UY09 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 KRT8P8-201ENST00000434750 1448 ntBASIC18.05■□□□□ 0.48
COL28A1Q2UY09 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL28A1Q2UY09 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 AC116351.2-201ENST00000606540 1585 ntBASIC18.04■□□□□ 0.48
COL28A1Q2UY09 AP001271.2-201ENST00000624018 1556 ntBASIC18.04■□□□□ 0.48
COL28A1Q2UY09 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms