Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CXCL12P48061 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.73■□□□□ 0.59
CXCL12P48061 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.73■□□□□ 0.59
CXCL12P48061 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 AL512353.2-201ENST00000448759 1962 ntBASIC18.73■□□□□ 0.59
CXCL12P48061 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL12P48061 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL12P48061 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL12P48061 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.72■□□□□ 0.59
CXCL12P48061 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CXCL12P48061 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL12P48061 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL12P48061 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL12P48061 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.72■□□□□ 0.59
CXCL12P48061 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL12P48061 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL12P48061 MIR564-202ENST00000385049 94 ntBASIC18.72■□□□□ 0.59
CXCL12P48061 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.72■□□□□ 0.59
CXCL12P48061 NUS1P2-201ENST00000417358 873 ntBASIC18.72■□□□□ 0.59
CXCL12P48061 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.72■□□□□ 0.59
CXCL12P48061 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.72■□□□□ 0.59
CXCL12P48061 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.72■□□□□ 0.59
CXCL12P48061 RN7SL606P-201ENST00000472779 293 ntBASIC18.72■□□□□ 0.59
CXCL12P48061 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.72■□□□□ 0.59
CXCL12P48061 MIR3180-4-201ENST00000582223 153 ntBASIC18.72■□□□□ 0.59
CXCL12P48061 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.72■□□□□ 0.59
CXCL12P48061 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL12P48061 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.72■□□□□ 0.59
CXCL12P48061 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CXCL12P48061 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.71■□□□□ 0.59
CXCL12P48061 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.71■□□□□ 0.59
CXCL12P48061 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CXCL12P48061 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.71■□□□□ 0.59
CXCL12P48061 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CXCL12P48061 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.71■□□□□ 0.59
CXCL12P48061 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.71■□□□□ 0.59
CXCL12P48061 AC024563.2-201ENST00000603282 481 ntBASIC18.71■□□□□ 0.59
CXCL12P48061 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.71■□□□□ 0.59
CXCL12P48061 AL773604.1-201ENST00000617417 272 ntBASIC18.71■□□□□ 0.59
CXCL12P48061 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.71■□□□□ 0.59
CXCL12P48061 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
CXCL12P48061 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CXCL12P48061 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.71■□□□□ 0.59
CXCL12P48061 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL12P48061 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
CXCL12P48061 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.58
CXCL12P48061 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
CXCL12P48061 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CXCL12P48061 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.7■□□□□ 0.58
CXCL12P48061 FAM197Y8-203ENST00000450145 560 ntBASIC18.7■□□□□ 0.58
CXCL12P48061 MINOS1P3-201ENST00000457048 203 ntBASIC18.7■□□□□ 0.58
CXCL12P48061 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.7■□□□□ 0.58
CXCL12P48061 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.7■□□□□ 0.58
CXCL12P48061 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.7■□□□□ 0.58
CXCL12P48061 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CXCL12P48061 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.7■□□□□ 0.58
CXCL12P48061 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CXCL12P48061 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.7■□□□□ 0.58
CXCL12P48061 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL12P48061 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CXCL12P48061 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL12P48061 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL12P48061 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CXCL12P48061 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL12P48061 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL12P48061 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL12P48061 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL12P48061 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL12P48061 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL12P48061 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms