Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.21■□□□□ 0.99
CIITAP33076 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.21■□□□□ 0.99
CIITAP33076 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.21■□□□□ 0.99
CIITAP33076 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
CIITAP33076 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CIITAP33076 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.2■□□□□ 0.98
CIITAP33076 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.2■□□□□ 0.98
CIITAP33076 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CIITAP33076 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CIITAP33076 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CIITAP33076 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CIITAP33076 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CIITAP33076 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CIITAP33076 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.2■□□□□ 0.98
CIITAP33076 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.2■□□□□ 0.98
CIITAP33076 AL441883.1-201ENST00000566170 1045 ntBASIC21.2■□□□□ 0.98
CIITAP33076 AL023973.1-201ENST00000624619 620 ntBASIC21.2■□□□□ 0.98
CIITAP33076 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CIITAP33076 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CIITAP33076 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.2■□□□□ 0.98
CIITAP33076 HOXB1-202ENST00000577092 1414 ntBASIC21.2■□□□□ 0.98
CIITAP33076 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.2■□□□□ 0.98
CIITAP33076 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CIITAP33076 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CIITAP33076 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CIITAP33076 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
CIITAP33076 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CIITAP33076 RNF152P1-201ENST00000397754 604 ntBASIC21.19■□□□□ 0.98
CIITAP33076 AK4P3-201ENST00000418260 669 ntBASIC21.19■□□□□ 0.98
CIITAP33076 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CIITAP33076 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.19■□□□□ 0.98
CIITAP33076 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CIITAP33076 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.19■□□□□ 0.98
CIITAP33076 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CIITAP33076 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CIITAP33076 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.19■□□□□ 0.98
CIITAP33076 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CIITAP33076 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CIITAP33076 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CIITAP33076 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
CIITAP33076 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CIITAP33076 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 AL357033.4-201ENST00000617703 1807 ntBASIC21.18■□□□□ 0.98
CIITAP33076 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.18■□□□□ 0.98
CIITAP33076 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.18■□□□□ 0.98
CIITAP33076 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CIITAP33076 TSPY5P-201ENST00000426936 936 ntBASIC21.18■□□□□ 0.98
CIITAP33076 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.18■□□□□ 0.98
CIITAP33076 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 AC063952.2-201ENST00000498792 1227 ntBASIC21.18■□□□□ 0.98
CIITAP33076 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.18■□□□□ 0.98
CIITAP33076 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.18■□□□□ 0.98
CIITAP33076 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.18■□□□□ 0.98
CIITAP33076 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 KRT8P7-201ENST00000533003 1432 ntBASIC21.18■□□□□ 0.98
CIITAP33076 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.18■□□□□ 0.98
CIITAP33076 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CIITAP33076 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CIITAP33076 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CIITAP33076 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.17■□□□□ 0.98
CIITAP33076 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CIITAP33076 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.17■□□□□ 0.98
CIITAP33076 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CIITAP33076 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.17■□□□□ 0.98
CIITAP33076 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.17■□□□□ 0.98
CIITAP33076 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.17■□□□□ 0.98
CIITAP33076 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.17■□□□□ 0.98
CIITAP33076 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CIITAP33076 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.17■□□□□ 0.98
CIITAP33076 AC140113.3-201ENST00000605663 199 ntBASIC21.17■□□□□ 0.98
CIITAP33076 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.17■□□□□ 0.98
CIITAP33076 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.17■□□□□ 0.98
CIITAP33076 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CIITAP33076 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms