Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL9A1P20849 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL9A1P20849 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL9A1P20849 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.35■□□□□ 0.69
COL9A1P20849 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL9A1P20849 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL9A1P20849 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
COL9A1P20849 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.34■□□□□ 0.69
COL9A1P20849 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
COL9A1P20849 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 AC099778.1-201ENST00000568593 1911 ntBASIC19.34■□□□□ 0.69
COL9A1P20849 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.34■□□□□ 0.69
COL9A1P20849 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.34■□□□□ 0.69
COL9A1P20849 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 DUX4L17-201ENST00000557360 1267 ntBASIC19.34■□□□□ 0.69
COL9A1P20849 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.34■□□□□ 0.69
COL9A1P20849 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.34■□□□□ 0.69
COL9A1P20849 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.34■□□□□ 0.69
COL9A1P20849 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL9A1P20849 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
COL9A1P20849 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
COL9A1P20849 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.34■□□□□ 0.69
COL9A1P20849 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL9A1P20849 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL9A1P20849 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL9A1P20849 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
COL9A1P20849 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL9A1P20849 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL9A1P20849 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL9A1P20849 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL9A1P20849 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL9A1P20849 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
COL9A1P20849 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.33■□□□□ 0.68
COL9A1P20849 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.33■□□□□ 0.68
COL9A1P20849 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.33■□□□□ 0.68
COL9A1P20849 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.33■□□□□ 0.68
COL9A1P20849 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.33■□□□□ 0.68
COL9A1P20849 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.33■□□□□ 0.68
COL9A1P20849 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL9A1P20849 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL9A1P20849 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
COL9A1P20849 AC104109.2-201ENST00000602919 1418 ntBASIC19.33■□□□□ 0.68
COL9A1P20849 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.33■□□□□ 0.68
COL9A1P20849 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL9A1P20849 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL9A1P20849 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL9A1P20849 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL9A1P20849 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL9A1P20849 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
COL9A1P20849 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
COL9A1P20849 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.32■□□□□ 0.68
COL9A1P20849 AL591424.1-201ENST00000442569 1213 ntBASIC19.32■□□□□ 0.68
COL9A1P20849 AP006288.1-201ENST00000446065 395 ntBASIC19.32■□□□□ 0.68
COL9A1P20849 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.32■□□□□ 0.68
COL9A1P20849 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
COL9A1P20849 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.32■□□□□ 0.68
COL9A1P20849 AC040169.1-201ENST00000565382 521 ntBASIC19.32■□□□□ 0.68
COL9A1P20849 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.32■□□□□ 0.68
COL9A1P20849 AC106028.4-201ENST00000614509 607 ntBASIC19.32■□□□□ 0.68
COL9A1P20849 AL589935.2-201ENST00000616471 1231 ntBASIC19.32■□□□□ 0.68
COL9A1P20849 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.32■□□□□ 0.68
COL9A1P20849 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL9A1P20849 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL9A1P20849 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL9A1P20849 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL9A1P20849 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL9A1P20849 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL9A1P20849 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL9A1P20849 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL9A1P20849 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.31■□□□□ 0.68
COL9A1P20849 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.31■□□□□ 0.68
COL9A1P20849 MIR4674-201ENST00000582457 87 ntBASIC19.31■□□□□ 0.68
COL9A1P20849 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
COL9A1P20849 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.31■□□□□ 0.68
COL9A1P20849 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.31■□□□□ 0.68
COL9A1P20849 AL355877.3-201ENST00000622820 899 ntBASIC19.31■□□□□ 0.68
COL9A1P20849 AC116407.3-201ENST00000623905 1129 ntBASIC19.31■□□□□ 0.68
COL9A1P20849 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
COL9A1P20849 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.31■□□□□ 0.68
COL9A1P20849 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL9A1P20849 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms