Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.78■□□□□ 0.6
XRCC1P18887 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
XRCC1P18887 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.77■□□□□ 0.6
XRCC1P18887 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC1P18887 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.77■□□□□ 0.6
XRCC1P18887 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC1P18887 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC1P18887 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC1P18887 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC1P18887 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC1P18887 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.77■□□□□ 0.6
XRCC1P18887 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC1P18887 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.77■□□□□ 0.6
XRCC1P18887 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.77■□□□□ 0.6
XRCC1P18887 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.77■□□□□ 0.6
XRCC1P18887 C2orf69P3-201ENST00000565542 1120 ntBASIC18.77■□□□□ 0.6
XRCC1P18887 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.77■□□□□ 0.6
XRCC1P18887 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.77■□□□□ 0.6
XRCC1P18887 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC1P18887 AC096733.2-201ENST00000609937 1394 ntBASIC18.77■□□□□ 0.6
XRCC1P18887 LINC01568-207ENST00000641790 1380 ntBASIC18.77■□□□□ 0.6
XRCC1P18887 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
XRCC1P18887 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.77■□□□□ 0.59
XRCC1P18887 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.77■□□□□ 0.59
XRCC1P18887 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
XRCC1P18887 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
XRCC1P18887 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
XRCC1P18887 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC1P18887 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
XRCC1P18887 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC1P18887 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC1P18887 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
XRCC1P18887 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.76■□□□□ 0.59
XRCC1P18887 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
XRCC1P18887 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.76■□□□□ 0.59
XRCC1P18887 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.76■□□□□ 0.59
XRCC1P18887 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.76■□□□□ 0.59
XRCC1P18887 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.76■□□□□ 0.59
XRCC1P18887 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC1P18887 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.76■□□□□ 0.59
XRCC1P18887 AC018470.1-201ENST00000624790 3129 ntBASIC18.76■□□□□ 0.59
XRCC1P18887 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
XRCC1P18887 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC1P18887 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.76■□□□□ 0.59
XRCC1P18887 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC1P18887 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC1P18887 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.76■□□□□ 0.59
XRCC1P18887 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.76■□□□□ 0.59
XRCC1P18887 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC1P18887 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
XRCC1P18887 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.76■□□□□ 0.59
XRCC1P18887 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC1P18887 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
XRCC1P18887 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.75■□□□□ 0.59
XRCC1P18887 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 KRT8P41-201ENST00000533985 1514 ntBASIC18.75■□□□□ 0.59
XRCC1P18887 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.75■□□□□ 0.59
XRCC1P18887 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
XRCC1P18887 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.75■□□□□ 0.59
XRCC1P18887 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.75■□□□□ 0.59
XRCC1P18887 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.75■□□□□ 0.59
XRCC1P18887 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 FAM210CP-201ENST00000445714 574 ntBASIC18.75■□□□□ 0.59
XRCC1P18887 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.75■□□□□ 0.59
XRCC1P18887 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.75■□□□□ 0.59
XRCC1P18887 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC1P18887 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 KRT18P22-201ENST00000402024 1347 ntBASIC18.74■□□□□ 0.59
XRCC1P18887 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.74■□□□□ 0.59
XRCC1P18887 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC1P18887 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.74■□□□□ 0.59
XRCC1P18887 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.74■□□□□ 0.59
XRCC1P18887 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 TSPY14P-201ENST00000303979 915 ntBASIC18.74■□□□□ 0.59
XRCC1P18887 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC1P18887 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC1P18887 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC1P18887 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC1P18887 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms