Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.14■□□□□ 0.49
CDX4O14627 BX842568.4-201ENST00000421222 227 ntBASIC18.14■□□□□ 0.49
CDX4O14627 MINOS1P3-201ENST00000457048 203 ntBASIC18.14■□□□□ 0.49
CDX4O14627 AC093909.1-201ENST00000504731 1122 ntBASIC18.14■□□□□ 0.49
CDX4O14627 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.14■□□□□ 0.49
CDX4O14627 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.14■□□□□ 0.49
CDX4O14627 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.14■□□□□ 0.49
CDX4O14627 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.14■□□□□ 0.49
CDX4O14627 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CDX4O14627 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
CDX4O14627 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 AL162377.1-201ENST00000618844 1793 ntBASIC18.14■□□□□ 0.49
CDX4O14627 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CDX4O14627 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX4O14627 RCC2P3-201ENST00000418112 1537 ntBASIC18.13■□□□□ 0.49
CDX4O14627 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.13■□□□□ 0.49
CDX4O14627 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.13■□□□□ 0.49
CDX4O14627 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDX4O14627 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.13■□□□□ 0.49
CDX4O14627 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX4O14627 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX4O14627 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX4O14627 RPL13AP23-201ENST00000480739 586 ntBASIC18.13■□□□□ 0.49
CDX4O14627 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.13■□□□□ 0.49
CDX4O14627 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.13■□□□□ 0.49
CDX4O14627 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX4O14627 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDX4O14627 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
CDX4O14627 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDX4O14627 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.13■□□□□ 0.49
CDX4O14627 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX4O14627 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX4O14627 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.13■□□□□ 0.49
CDX4O14627 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CDX4O14627 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.12■□□□□ 0.49
CDX4O14627 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX4O14627 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 AL512353.2-201ENST00000448759 1962 ntBASIC18.12■□□□□ 0.49
CDX4O14627 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 MIR940-201ENST00000401276 94 ntBASIC18.12■□□□□ 0.49
CDX4O14627 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.12■□□□□ 0.49
CDX4O14627 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CDX4O14627 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.12■□□□□ 0.49
CDX4O14627 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.12■□□□□ 0.49
CDX4O14627 AC024563.2-201ENST00000603282 481 ntBASIC18.12■□□□□ 0.49
CDX4O14627 AL591684.3-201ENST00000605187 298 ntBASIC18.12■□□□□ 0.49
CDX4O14627 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CDX4O14627 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.12■□□□□ 0.49
CDX4O14627 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.12■□□□□ 0.49
CDX4O14627 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.12■□□□□ 0.49
CDX4O14627 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX4O14627 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX4O14627 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX4O14627 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX4O14627 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDX4O14627 AC005104.2-201ENST00000427818 678 ntBASIC18.11■□□□□ 0.49
CDX4O14627 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.11■□□□□ 0.49
CDX4O14627 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.11■□□□□ 0.49
CDX4O14627 AC018712.1-201ENST00000455767 687 ntBASIC18.11■□□□□ 0.49
CDX4O14627 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CDX4O14627 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.11■□□□□ 0.49
CDX4O14627 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDX4O14627 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.11■□□□□ 0.49
CDX4O14627 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDX4O14627 MIR5100-201ENST00000579544 119 ntBASIC18.11■□□□□ 0.49
CDX4O14627 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.11■□□□□ 0.49
CDX4O14627 AL049840.3-201ENST00000602669 611 ntBASIC18.11■□□□□ 0.49
CDX4O14627 AL353692.3-201ENST00000407031 1396 ntBASIC18.11■□□□□ 0.49
CDX4O14627 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.11■□□□□ 0.49
CDX4O14627 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX4O14627 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.11■□□□□ 0.49
CDX4O14627 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDX4O14627 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
CDX4O14627 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CDX4O14627 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX4O14627 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX4O14627 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX4O14627 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX4O14627 MIR564-202ENST00000385049 94 ntBASIC18.1■□□□□ 0.49
CDX4O14627 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDX4O14627 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.1■□□□□ 0.49
CDX4O14627 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.1■□□□□ 0.49
CDX4O14627 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX4O14627 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.1■□□□□ 0.49
CDX4O14627 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.1■□□□□ 0.49
CDX4O14627 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms