Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 C2orf69P4-201ENST00000565394 541 ntBASIC13.78□□□□□ -0.2
SMKR1H3BMG3 AC013268.1-206ENST00000638368 961 ntBASIC13.78□□□□□ -0.2
SMKR1H3BMG3 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 AC112229.1-201ENST00000639295 961 ntBASIC13.78□□□□□ -0.2
SMKR1H3BMG3 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 FEM1AP3-201ENST00000403722 1741 ntBASIC13.78□□□□□ -0.2
SMKR1H3BMG3 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 ANKRD18DP-204ENST00000455355 1975 ntBASIC13.78□□□□□ -0.2
SMKR1H3BMG3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
SMKR1H3BMG3 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SMKR1H3BMG3 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 AC007322.4-201ENST00000509611 723 ntBASIC13.77□□□□□ -0.21
SMKR1H3BMG3 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 CYP2T3P-201ENST00000601990 817 ntBASIC13.77□□□□□ -0.21
SMKR1H3BMG3 AC073592.3-201ENST00000625118 1834 ntBASIC13.77□□□□□ -0.21
SMKR1H3BMG3 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SMKR1H3BMG3 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 PRORSD1P-202ENST00000563365 2154 ntBASIC13.76□□□□□ -0.21
SMKR1H3BMG3 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 PCDHA12-202ENST00000613593 2588 ntBASIC13.76□□□□□ -0.21
SMKR1H3BMG3 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 JTB-203ENST00000368589 1216 ntTSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SMKR1H3BMG3 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms