Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC87Q9NVE4 AL662814.1-201ENST00000617364 121 ntBASIC2.17□□□□□ -2.06
CCDC87Q9NVE4 uc_338.20-201ENST00000621563 178 ntBASIC2.17□□□□□ -2.06
CCDC87Q9NVE4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC87Q9NVE4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC87Q9NVE4 Y_RNA.220-201ENST00000364244 109 ntBASIC2.16□□□□□ -2.06
CCDC87Q9NVE4 RNU6-1237P-201ENST00000384777 107 ntBASIC2.16□□□□□ -2.06
CCDC87Q9NVE4 RNU2-40P-201ENST00000410833 196 ntBASIC2.16□□□□□ -2.06
CCDC87Q9NVE4 AC027119.1-201ENST00000440877 241 ntBASIC2.16□□□□□ -2.06
CCDC87Q9NVE4 RNU7-137P-201ENST00000516788 62 ntBASIC2.16□□□□□ -2.06
CCDC87Q9NVE4 AC141846.1-201ENST00000568348 142 ntBASIC2.16□□□□□ -2.06
CCDC87Q9NVE4 MIR4419B-201ENST00000577260 68 ntBASIC2.16□□□□□ -2.06
CCDC87Q9NVE4 MIR3937-201ENST00000580135 106 ntBASIC2.16□□□□□ -2.06
CCDC87Q9NVE4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.15□□□□□ -2.06
CCDC87Q9NVE4 RNY1P13-201ENST00000365030 105 ntBASIC2.15□□□□□ -2.07
CCDC87Q9NVE4 AC004941.2-201ENST00000427009 228 ntBASIC2.15□□□□□ -2.07
CCDC87Q9NVE4 MIR514B-201ENST00000516774 80 ntBASIC2.15□□□□□ -2.07
CCDC87Q9NVE4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC87Q9NVE4 RNU6-170P-201ENST00000362832 104 ntBASIC2.14□□□□□ -2.07
CCDC87Q9NVE4 Y_RNA.98-201ENST00000363109 102 ntBASIC2.14□□□□□ -2.07
CCDC87Q9NVE4 RNU6-865P-201ENST00000364772 107 ntBASIC2.14□□□□□ -2.07
CCDC87Q9NVE4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
CCDC87Q9NVE4 RNU1-78P-201ENST00000391248 165 ntBASIC2.14□□□□□ -2.07
CCDC87Q9NVE4 RNA5SP489-201ENST00000410986 109 ntBASIC2.14□□□□□ -2.07
CCDC87Q9NVE4 SNORD53B-201ENST00000577887 78 ntBASIC2.14□□□□□ -2.07
CCDC87Q9NVE4 MIR3664-201ENST00000579074 99 ntBASIC2.14□□□□□ -2.07
CCDC87Q9NVE4 MIR377-201ENST00000362145 69 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 RNA5SP264-201ENST00000363115 107 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 SNORA25.3-201ENST00000363205 127 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 SNORD38.1-201ENST00000363863 68 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 MIR588-201ENST00000384900 83 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 MIR563-201ENST00000385080 79 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 AC008834.1-201ENST00000511612 175 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 Y_RNA.659-201ENST00000515994 113 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 AC019176.1-201ENST00000518519 225 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 MIR4422-201ENST00000581938 83 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 AL645939.4-201ENST00000604495 135 ntBASIC2.13□□□□□ -2.07
CCDC87Q9NVE4 Y_RNA.95-201ENST00000363079 95 ntBASIC2.12□□□□□ -2.07
CCDC87Q9NVE4 RNU6-949P-201ENST00000384040 107 ntBASIC2.12□□□□□ -2.07
CCDC87Q9NVE4 Y_RNA.448-201ENST00000384185 108 ntBASIC2.12□□□□□ -2.07
CCDC87Q9NVE4 SNORD38.2-201ENST00000384470 69 ntBASIC2.12□□□□□ -2.07
CCDC87Q9NVE4 snoU13.25-201ENST00000458945 104 ntBASIC2.12□□□□□ -2.07
CCDC87Q9NVE4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.12□□□□□ -2.07
CCDC87Q9NVE4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.12□□□□□ -2.07
CCDC87Q9NVE4 MIR103A2-201ENST00000362154 78 ntBASIC2.11□□□□□ -2.07
CCDC87Q9NVE4 RNU6-1131P-201ENST00000364955 107 ntBASIC2.11□□□□□ -2.07
CCDC87Q9NVE4 RNU6-613P-201ENST00000410412 108 ntBASIC2.11□□□□□ -2.07
CCDC87Q9NVE4 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC87Q9NVE4 RPS29P28-201ENST00000446439 141 ntBASIC2.11□□□□□ -2.07
CCDC87Q9NVE4 RNU7-48P-201ENST00000458875 63 ntBASIC2.11□□□□□ -2.07
CCDC87Q9NVE4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC87Q9NVE4 MALAT1.1-201ENST00000618249 95 ntBASIC2.11□□□□□ -2.07
CCDC87Q9NVE4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
CCDC87Q9NVE4 RNU6-60P-201ENST00000364792 103 ntBASIC2.1□□□□□ -2.07
CCDC87Q9NVE4 RNU6-294P-201ENST00000364999 102 ntBASIC2.1□□□□□ -2.07
CCDC87Q9NVE4 MIR7-2-201ENST00000384970 110 ntBASIC2.1□□□□□ -2.07
CCDC87Q9NVE4 RNU6-1321P-201ENST00000390905 107 ntBASIC2.1□□□□□ -2.07
CCDC87Q9NVE4 AC133485.1-201ENST00000567176 124 ntBASIC2.1□□□□□ -2.07
CCDC87Q9NVE4 AC012531.4-201ENST00000616509 177 ntBASIC2.1□□□□□ -2.07
CCDC87Q9NVE4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.1□□□□□ -2.07
CCDC87Q9NVE4 MIR4679-1-201ENST00000637619 75 ntBASIC2.1□□□□□ -2.07
CCDC87Q9NVE4 Y_RNA.191-201ENST00000363972 113 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 RNU1-42P-201ENST00000364033 160 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 Y_RNA.342-201ENST00000365352 113 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 MIR488-201ENST00000365739 83 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 MIR1185-1-201ENST00000408598 86 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 MRPL35P3-201ENST00000421557 364 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 UBL5P1-201ENST00000507979 193 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 RNU6-795P-201ENST00000516323 103 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 SNORA72.7-201ENST00000516349 94 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 RNU6-1006P-201ENST00000516998 103 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 AL512310.8-201ENST00000550183 120 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 MIR6516-201ENST00000630554 81 ntBASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC87Q9NVE4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.08□□□□□ -2.08
CCDC87Q9NVE4 Y_RNA.558-201ENST00000384685 113 ntBASIC2.08□□□□□ -2.08
CCDC87Q9NVE4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
CCDC87Q9NVE4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC87Q9NVE4 Y_RNA.705-201ENST00000516862 110 ntBASIC2.08□□□□□ -2.08
CCDC87Q9NVE4 AC105081.1-201ENST00000617727 106 ntBASIC2.08□□□□□ -2.08
CCDC87Q9NVE4 AP001362.1-201ENST00000625165 124 ntBASIC2.08□□□□□ -2.08
CCDC87Q9NVE4 SNORA7.1-201ENST00000363750 139 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 MIR34C-201ENST00000384831 77 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 MT-TF-201ENST00000387314 71 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 RNU6-1307P-201ENST00000391012 103 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 RNU6-972P-201ENST00000391208 107 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 MIR934-201ENST00000401241 83 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 RNU6-1165P-201ENST00000410119 107 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 RNU6-1054P-201ENST00000411293 104 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 RNU7-62P-201ENST00000458856 62 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 MIR4777-201ENST00000583710 86 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 MIR376B-201ENST00000614515 100 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 MIR6740-201ENST00000618268 113 ntBASIC2.07□□□□□ -2.08
CCDC87Q9NVE4 RNU6-49P-201ENST00000384256 107 ntBASIC2.06□□□□□ -2.08
CCDC87Q9NVE4 MIR1302-4-201ENST00000408701 150 ntBASIC2.06□□□□□ -2.08
CCDC87Q9NVE4 RNU6-165P-201ENST00000517170 99 ntBASIC2.06□□□□□ -2.08
CCDC87Q9NVE4 RNU6-844P-201ENST00000517175 102 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms