Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS9D1Q9Y2B5 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 Y_RNA.536-201ENST00000384621 113 ntBASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 MIR519A1-201ENST00000385257 85 ntBASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 SNORD67-201ENST00000390833 111 ntBASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 SNORD100-201ENST00000408573 76 ntBASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 Y_RNA.809-201ENST00000516058 95 ntBASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 SNORA31.15-201ENST00000516771 132 ntBASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 Y_RNA.722-201ENST00000517279 114 ntBASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 RNU7-10P-201ENST00000607194 63 ntBASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3□□□□□ -1.93
VPS9D1Q9Y2B5 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS9D1Q9Y2B5 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS9D1Q9Y2B5 AC073325.2-201ENST00000339545 159 ntBASIC2.99□□□□□ -1.93
VPS9D1Q9Y2B5 RNU6-1123P-201ENST00000362347 106 ntBASIC2.99□□□□□ -1.93
VPS9D1Q9Y2B5 RNU6-1260P-201ENST00000362944 107 ntBASIC2.99□□□□□ -1.93
VPS9D1Q9Y2B5 MIR653-201ENST00000385279 96 ntBASIC2.99□□□□□ -1.93
VPS9D1Q9Y2B5 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS9D1Q9Y2B5 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 AC108206.1-201ENST00000570186 4159 ntBASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 SNORA71.1-201ENST00000364523 117 ntBASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 MIR1289-1-201ENST00000408836 144 ntBASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 RN7SKP123-201ENST00000410732 291 ntBASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 RNU7-62P-201ENST00000458856 62 ntBASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 MIR548H5-201ENST00000580314 60 ntBASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.98□□□□□ -1.93
VPS9D1Q9Y2B5 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 MIR101-2-201ENST00000362195 79 ntBASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 RNU6-1079P-201ENST00000362861 110 ntBASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 AC105272.1-201ENST00000438604 198 ntBASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 SNORD111.1-201ENST00000516421 86 ntBASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 AP000942.3-201ENST00000603702 160 ntBASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 AC007318.2-201ENST00000620999 243 ntBASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 U6.100-201ENST00000636230 99 ntBASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS9D1Q9Y2B5 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.93
VPS9D1Q9Y2B5 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 SNORA9.2-201ENST00000365361 133 ntBASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-851P-201ENST00000384565 107 ntBASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 U8.13-201ENST00000390842 128 ntBASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-808P-201ENST00000391233 108 ntBASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 Y_RNA.588-201ENST00000391254 102 ntBASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-1052P-201ENST00000411398 104 ntBASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-752P-201ENST00000516376 102 ntBASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-719P-201ENST00000516671 104 ntBASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 MTRNR2L2-201ENST00000604882 87 ntBASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-654P-201ENST00000364373 107 ntBASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 U8.9-201ENST00000365667 134 ntBASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 MIR1302-7-201ENST00000408841 72 ntBASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-935P-201ENST00000410371 100 ntBASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 RNA5SP501-201ENST00000410990 112 ntBASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 AL139132.1-201ENST00000431587 344 ntBASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-274P-201ENST00000459566 107 ntBASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 DEFB122-202ENST00000569013 197 ntBASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 AC006023.1-201ENST00000603944 259 ntBASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 IST1-227ENST00000626438 126 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS9D1Q9Y2B5 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS9D1Q9Y2B5 RNU1-148P-201ENST00000384472 162 ntBASIC2.94□□□□□ -1.94
VPS9D1Q9Y2B5 MIR518A2-201ENST00000384966 87 ntBASIC2.94□□□□□ -1.94
VPS9D1Q9Y2B5 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.94□□□□□ -1.94
VPS9D1Q9Y2B5 SNORD93-201ENST00000408813 74 ntBASIC2.94□□□□□ -1.94
VPS9D1Q9Y2B5 AC092634.7-201ENST00000621022 103 ntBASIC2.94□□□□□ -1.94
VPS9D1Q9Y2B5 MIR7978-201ENST00000636158 59 ntBASIC2.94□□□□□ -1.94
VPS9D1Q9Y2B5 MIR4773-1-201ENST00000637203 78 ntBASIC2.94□□□□□ -1.94
VPS9D1Q9Y2B5 AL365361.1-201ENST00000566942 3481 ntBASIC2.94□□□□□ -1.94
VPS9D1Q9Y2B5 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS9D1Q9Y2B5 SNORA25.3-201ENST00000363205 127 ntBASIC2.93□□□□□ -1.94
VPS9D1Q9Y2B5 SNORA54-201ENST00000384281 123 ntBASIC2.93□□□□□ -1.94
VPS9D1Q9Y2B5 MIR451A-201ENST00000385059 72 ntBASIC2.93□□□□□ -1.94
VPS9D1Q9Y2B5 MT-TN-201ENST00000387400 73 ntBASIC2.93□□□□□ -1.94
VPS9D1Q9Y2B5 RPL30P7-201ENST00000479312 323 ntBASIC2.93□□□□□ -1.94
VPS9D1Q9Y2B5 AC008885.1-201ENST00000514930 301 ntBASIC2.93□□□□□ -1.94
VPS9D1Q9Y2B5 AC016717.2-201ENST00000609089 5141 ntBASIC2.93□□□□□ -1.94
VPS9D1Q9Y2B5 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 MIR887-201ENST00000401258 79 ntBASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 SNORA11.2-201ENST00000408318 127 ntBASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 AP004217.1-201ENST00000480579 346 ntBASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-542P-201ENST00000516405 103 ntBASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 MIR2115-201ENST00000516657 100 ntBASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-56P-201ENST00000516986 93 ntBASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 GTF3AP2-201ENST00000557014 266 ntBASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 MIR466-201ENST00000580653 84 ntBASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 MIR4325-201ENST00000583049 90 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 241.4 ms