Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 RNU4-32P-201ENST00000363404 141 ntBASIC2.76□□□□□ -1.97
HLA-CQ95604 SNORD56.3-201ENST00000363507 71 ntBASIC2.76□□□□□ -1.97
HLA-CQ95604 MIR27B-201ENST00000385129 97 ntBASIC2.76□□□□□ -1.97
HLA-CQ95604 MIR513A1-201ENST00000385138 129 ntBASIC2.76□□□□□ -1.97
HLA-CQ95604 MT-TF-201ENST00000387314 71 ntBASIC2.76□□□□□ -1.97
HLA-CQ95604 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
HLA-CQ95604 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.76□□□□□ -1.97
HLA-CQ95604 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.76□□□□□ -1.97
HLA-CQ95604 JTBP1-201ENST00000441314 247 ntBASIC2.76□□□□□ -1.97
HLA-CQ95604 RNU7-153P-201ENST00000516455 62 ntBASIC2.76□□□□□ -1.97
HLA-CQ95604 MIR4500-201ENST00000579472 76 ntBASIC2.76□□□□□ -1.97
HLA-CQ95604 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HLA-CQ95604 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HLA-CQ95604 MIR26A1-201ENST00000362205 77 ntBASIC2.75□□□□□ -1.97
HLA-CQ95604 Y_RNA.338-201ENST00000365320 114 ntBASIC2.75□□□□□ -1.97
HLA-CQ95604 SNORA72.6-201ENST00000384520 129 ntBASIC2.75□□□□□ -1.97
HLA-CQ95604 RNU4-83P-201ENST00000410863 133 ntBASIC2.75□□□□□ -1.97
HLA-CQ95604 FGF7P7-201ENST00000514120 227 ntBASIC2.75□□□□□ -1.97
HLA-CQ95604 RNA5SP320-201ENST00000516263 124 ntBASIC2.75□□□□□ -1.97
HLA-CQ95604 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HLA-CQ95604 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.74□□□□□ -1.97
HLA-CQ95604 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
HLA-CQ95604 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
HLA-CQ95604 RNU6-478P-201ENST00000363904 110 ntBASIC2.74□□□□□ -1.97
HLA-CQ95604 SNORD41-201ENST00000386967 70 ntBASIC2.74□□□□□ -1.97
HLA-CQ95604 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.74□□□□□ -1.97
HLA-CQ95604 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.74□□□□□ -1.97
HLA-CQ95604 RNU7-85P-201ENST00000458851 63 ntBASIC2.74□□□□□ -1.97
HLA-CQ95604 MIR2115-201ENST00000516657 100 ntBASIC2.74□□□□□ -1.97
HLA-CQ95604 RNU6-250P-201ENST00000516958 103 ntBASIC2.74□□□□□ -1.97
HLA-CQ95604 MIR1273D-201ENST00000577266 86 ntBASIC2.74□□□□□ -1.97
HLA-CQ95604 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.73□□□□□ -1.97
HLA-CQ95604 Y_RNA.119-201ENST00000363301 96 ntBASIC2.73□□□□□ -1.97
HLA-CQ95604 RNU6-686P-201ENST00000364839 107 ntBASIC2.73□□□□□ -1.97
HLA-CQ95604 RNA5SP259-201ENST00000365541 109 ntBASIC2.73□□□□□ -1.97
HLA-CQ95604 RNU1-52P-201ENST00000384190 164 ntBASIC2.73□□□□□ -1.97
HLA-CQ95604 Y_RNA.508-201ENST00000384502 114 ntBASIC2.73□□□□□ -1.97
HLA-CQ95604 SNORA40.18-201ENST00000391200 128 ntBASIC2.73□□□□□ -1.97
HLA-CQ95604 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
HLA-CQ95604 HSPE1P24-201ENST00000450782 238 ntBASIC2.73□□□□□ -1.97
HLA-CQ95604 RNU11-2P-201ENST00000516898 142 ntBASIC2.73□□□□□ -1.97
HLA-CQ95604 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.73□□□□□ -1.97
HLA-CQ95604 U6.109-201ENST00000636749 87 ntBASIC2.73□□□□□ -1.97
HLA-CQ95604 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.73□□□□□ -1.97
HLA-CQ95604 MIR377-201ENST00000362145 69 ntBASIC2.72□□□□□ -1.97
HLA-CQ95604 MIR30D-201ENST00000362283 70 ntBASIC2.72□□□□□ -1.97
HLA-CQ95604 SNORA25.9-201ENST00000365087 128 ntBASIC2.72□□□□□ -1.97
HLA-CQ95604 RNA5SP212-201ENST00000391223 107 ntBASIC2.72□□□□□ -1.97
HLA-CQ95604 AC090255.1-201ENST00000495779 349 ntBASIC2.72□□□□□ -1.97
HLA-CQ95604 RNU2-19P-201ENST00000517288 84 ntBASIC2.72□□□□□ -1.97
HLA-CQ95604 AC104027.1-201ENST00000521887 300 ntBASIC2.72□□□□□ -1.97
HLA-CQ95604 MIR4796-201ENST00000580742 81 ntBASIC2.72□□□□□ -1.97
HLA-CQ95604 AP000942.3-201ENST00000603702 160 ntBASIC2.72□□□□□ -1.97
HLA-CQ95604 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
HLA-CQ95604 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-CQ95604 MIRLET7A1-201ENST00000362295 80 ntBASIC2.71□□□□□ -1.98
HLA-CQ95604 RNU6-1165P-201ENST00000410119 107 ntBASIC2.71□□□□□ -1.98
HLA-CQ95604 RNA5SP445-201ENST00000515889 115 ntBASIC2.71□□□□□ -1.98
HLA-CQ95604 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-CQ95604 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HLA-CQ95604 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.7□□□□□ -1.98
HLA-CQ95604 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HLA-CQ95604 SNORA63.2-201ENST00000362603 126 ntBASIC2.7□□□□□ -1.98
HLA-CQ95604 SNORA3A-201ENST00000364113 130 ntBASIC2.7□□□□□ -1.98
HLA-CQ95604 Y_RNA.226-201ENST00000364337 114 ntBASIC2.7□□□□□ -1.98
HLA-CQ95604 RNU6-811P-201ENST00000384069 107 ntBASIC2.7□□□□□ -1.98
HLA-CQ95604 RNU6-1254P-201ENST00000391266 104 ntBASIC2.7□□□□□ -1.98
HLA-CQ95604 MIR1302-7-201ENST00000408841 72 ntBASIC2.7□□□□□ -1.98
HLA-CQ95604 UQCRHP3-201ENST00000451503 251 ntBASIC2.7□□□□□ -1.98
HLA-CQ95604 RN7SL499P-201ENST00000481141 276 ntBASIC2.7□□□□□ -1.98
HLA-CQ95604 GHRLOS.1-201ENST00000610995 70 ntBASIC2.7□□□□□ -1.98
HLA-CQ95604 MIR6740-201ENST00000618268 113 ntBASIC2.7□□□□□ -1.98
HLA-CQ95604 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
HLA-CQ95604 RNU6-590P-201ENST00000365039 107 ntBASIC2.69□□□□□ -1.98
HLA-CQ95604 AL450471.1-201ENST00000447509 127 ntBASIC2.69□□□□□ -1.98
HLA-CQ95604 HMGN2P23-201ENST00000456759 269 ntBASIC2.69□□□□□ -1.98
HLA-CQ95604 AP004217.1-201ENST00000480579 346 ntBASIC2.69□□□□□ -1.98
HLA-CQ95604 RNU7-193P-201ENST00000516723 65 ntBASIC2.69□□□□□ -1.98
HLA-CQ95604 MIR3192-201ENST00000584920 77 ntBASIC2.69□□□□□ -1.98
HLA-CQ95604 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
HLA-CQ95604 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HLA-CQ95604 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HLA-CQ95604 RPL23AP42-201ENST00000471152 471 ntBASIC2.68□□□□□ -1.98
HLA-CQ95604 RPL30P7-201ENST00000479312 323 ntBASIC2.68□□□□□ -1.98
HLA-CQ95604 MIR4536-1-201ENST00000583537 88 ntBASIC2.68□□□□□ -1.98
HLA-CQ95604 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.68□□□□□ -1.98
HLA-CQ95604 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
HLA-CQ95604 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-CQ95604 SNORD36A-201ENST00000362874 73 ntBASIC2.67□□□□□ -1.98
HLA-CQ95604 RNU6-53P-201ENST00000365367 106 ntBASIC2.67□□□□□ -1.98
HLA-CQ95604 RNU6-243P-201ENST00000391140 107 ntBASIC2.67□□□□□ -1.98
HLA-CQ95604 RNU7-62P-201ENST00000458856 62 ntBASIC2.67□□□□□ -1.98
HLA-CQ95604 RN7SL274P-201ENST00000492268 272 ntBASIC2.67□□□□□ -1.98
HLA-CQ95604 AC114801.3-201ENST00000510231 177 ntBASIC2.67□□□□□ -1.98
HLA-CQ95604 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-CQ95604 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-CQ95604 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
HLA-CQ95604 Y_RNA.264-201ENST00000364665 102 ntBASIC2.66□□□□□ -1.98
HLA-CQ95604 MIR548U-201ENST00000390728 81 ntBASIC2.66□□□□□ -1.98
HLA-CQ95604 BX276092.1-201ENST00000427368 251 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 209.1 ms