Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 RNA5SP481-201ENST00000516814 122 ntBASIC2.05□□□□□ -2.08
TRIM13O60858 SNORA74.3-201ENST00000517108 154 ntBASIC2.05□□□□□ -2.08
TRIM13O60858 RNA5SP437-201ENST00000517249 129 ntBASIC2.05□□□□□ -2.08
TRIM13O60858 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.05□□□□□ -2.08
TRIM13O60858 RNA5SP289-201ENST00000362332 137 ntBASIC2.04□□□□□ -2.08
TRIM13O60858 SNORA16B-201ENST00000364674 135 ntBASIC2.04□□□□□ -2.08
TRIM13O60858 RNU4-52P-201ENST00000384209 138 ntBASIC2.04□□□□□ -2.08
TRIM13O60858 AL450471.1-201ENST00000447509 127 ntBASIC2.04□□□□□ -2.08
TRIM13O60858 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.04□□□□□ -2.08
TRIM13O60858 SNORD4B-201ENST00000459083 72 ntBASIC2.04□□□□□ -2.08
TRIM13O60858 AC079804.2-201ENST00000490376 200 ntBASIC2.04□□□□□ -2.08
TRIM13O60858 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
TRIM13O60858 RNY1P13-201ENST00000365030 105 ntBASIC2.03□□□□□ -2.08
TRIM13O60858 RNU6-296P-201ENST00000384608 107 ntBASIC2.03□□□□□ -2.08
TRIM13O60858 AC055731.1-201ENST00000474387 401 ntBASIC2.03□□□□□ -2.08
TRIM13O60858 RNU6-917P-201ENST00000516294 104 ntBASIC2.03□□□□□ -2.08
TRIM13O60858 RNU6-557P-201ENST00000516842 110 ntBASIC2.03□□□□□ -2.08
TRIM13O60858 CYP3A52P-201ENST00000563326 91 ntBASIC2.03□□□□□ -2.08
TRIM13O60858 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.03□□□□□ -2.08
TRIM13O60858 AC008133.2-201ENST00000624540 351 ntBASIC2.03□□□□□ -2.08
TRIM13O60858 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.02□□□□□ -2.09
TRIM13O60858 RNU4-32P-201ENST00000363404 141 ntBASIC2.02□□□□□ -2.09
TRIM13O60858 RNU7-43P-201ENST00000516554 64 ntBASIC2.02□□□□□ -2.09
TRIM13O60858 MIR3935-201ENST00000583472 104 ntBASIC2.02□□□□□ -2.09
TRIM13O60858 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
TRIM13O60858 MIR17-201ENST00000385012 84 ntBASIC2.01□□□□□ -2.09
TRIM13O60858 MIR4709-201ENST00000577272 72 ntBASIC2.01□□□□□ -2.09
TRIM13O60858 MIR8066-201ENST00000617280 78 ntBASIC2.01□□□□□ -2.09
TRIM13O60858 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.01□□□□□ -2.09
TRIM13O60858 SCARNA15.3-201ENST00000626315 122 ntBASIC2.01□□□□□ -2.09
TRIM13O60858 MIRLET7A1-201ENST00000362295 80 ntBASIC2□□□□□ -2.09
TRIM13O60858 RNY1P2-201ENST00000364820 117 ntBASIC2□□□□□ -2.09
TRIM13O60858 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC2□□□□□ -2.09
TRIM13O60858 AL023284.1-201ENST00000403956 276 ntBASIC2□□□□□ -2.09
TRIM13O60858 RNA5SP100-201ENST00000410903 110 ntBASIC2□□□□□ -2.09
TRIM13O60858 RNA5SP59-201ENST00000410922 110 ntBASIC2□□□□□ -2.09
TRIM13O60858 AL356379.1-201ENST00000414105 126 ntBASIC2□□□□□ -2.09
TRIM13O60858 snoU13.11-201ENST00000459219 104 ntBASIC2□□□□□ -2.09
TRIM13O60858 snoU13.27-201ENST00000459278 104 ntBASIC2□□□□□ -2.09
TRIM13O60858 RPS29P11-201ENST00000496507 171 ntBASIC2□□□□□ -2.09
TRIM13O60858 RNU6-539P-201ENST00000516665 103 ntBASIC2□□□□□ -2.09
TRIM13O60858 MIR514B-201ENST00000516774 80 ntBASIC2□□□□□ -2.09
TRIM13O60858 5S_rRNA.3-201ENST00000517021 110 ntBASIC2□□□□□ -2.09
TRIM13O60858 AL512598.1-201ENST00000610158 273 ntBASIC2□□□□□ -2.09
TRIM13O60858 5S_rRNA.19-201ENST00000612131 110 ntBASIC2□□□□□ -2.09
TRIM13O60858 5S_rRNA.18-201ENST00000621941 110 ntBASIC2□□□□□ -2.09
TRIM13O60858 MIR424-201ENST00000362227 98 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 RNU6-1237P-201ENST00000384777 107 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 HMGN2P38-201ENST00000423806 265 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 SNRPGP12-201ENST00000449481 213 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 SCARNA18B-201ENST00000458806 135 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 RNU7-85P-201ENST00000458851 63 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 RNA5SP364-201ENST00000516938 78 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 AC133485.1-201ENST00000567176 124 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 AC141846.1-201ENST00000568348 142 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 MIR3134-201ENST00000579433 74 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 MIR548AO-201ENST00000579992 96 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 MIR4764-201ENST00000580680 88 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 MIR3162-201ENST00000581818 82 ntBASIC1.99□□□□□ -2.09
TRIM13O60858 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
TRIM13O60858 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
TRIM13O60858 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
TRIM13O60858 AP000648.3-201ENST00000623539 4507 ntBASIC1.98□□□□□ -2.09
TRIM13O60858 SNORA63.2-201ENST00000362603 126 ntBASIC1.98□□□□□ -2.09
TRIM13O60858 RNU6-686P-201ENST00000364839 107 ntBASIC1.98□□□□□ -2.09
TRIM13O60858 AC019129.1-201ENST00000403786 261 ntBASIC1.98□□□□□ -2.09
TRIM13O60858 SUMO2P12-201ENST00000405924 140 ntBASIC1.98□□□□□ -2.09
TRIM13O60858 RNU4-83P-201ENST00000410863 133 ntBASIC1.98□□□□□ -2.09
TRIM13O60858 AP000753.3-201ENST00000604083 169 ntBASIC1.98□□□□□ -2.09
TRIM13O60858 SCARNA4.1-201ENST00000628597 123 ntBASIC1.98□□□□□ -2.09
TRIM13O60858 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.98□□□□□ -2.09
TRIM13O60858 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
TRIM13O60858 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
TRIM13O60858 Y_RNA.508-201ENST00000384502 114 ntBASIC1.97□□□□□ -2.09
TRIM13O60858 SNORA40.18-201ENST00000391200 128 ntBASIC1.97□□□□□ -2.09
TRIM13O60858 RNU4-53P-201ENST00000410828 140 ntBASIC1.97□□□□□ -2.09
TRIM13O60858 Y_RNA.648-201ENST00000459455 110 ntBASIC1.97□□□□□ -2.09
TRIM13O60858 AC090897.1-201ENST00000580909 226 ntBASIC1.97□□□□□ -2.09
TRIM13O60858 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.97□□□□□ -2.09
TRIM13O60858 AL662814.1-201ENST00000617364 121 ntBASIC1.97□□□□□ -2.09
TRIM13O60858 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
TRIM13O60858 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.96□□□□□ -2.09
TRIM13O60858 WWP1P1-201ENST00000466609 2769 ntBASIC1.96□□□□□ -2.1
TRIM13O60858 RNU6-411P-201ENST00000384451 107 ntBASIC1.96□□□□□ -2.1
TRIM13O60858 SNORD38B-201ENST00000384690 67 ntBASIC1.96□□□□□ -2.1
TRIM13O60858 RNA5SP212-201ENST00000391223 107 ntBASIC1.96□□□□□ -2.1
TRIM13O60858 RNA5SP237-201ENST00000410414 113 ntBASIC1.96□□□□□ -2.1
TRIM13O60858 SNORA31.17-201ENST00000516953 127 ntBASIC1.96□□□□□ -2.1
TRIM13O60858 MIR4796-201ENST00000580742 81 ntBASIC1.96□□□□□ -2.1
TRIM13O60858 MIR6873-201ENST00000622788 63 ntBASIC1.96□□□□□ -2.1
TRIM13O60858 SNORD38B-202ENST00000625943 69 ntBASIC1.96□□□□□ -2.1
TRIM13O60858 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
TRIM13O60858 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.95□□□□□ -2.1
TRIM13O60858 RNU6-949P-201ENST00000384040 107 ntBASIC1.95□□□□□ -2.1
TRIM13O60858 Y_RNA.510-201ENST00000384511 114 ntBASIC1.95□□□□□ -2.1
TRIM13O60858 MIR520C-201ENST00000385005 87 ntBASIC1.95□□□□□ -2.1
TRIM13O60858 RNU6-360P-201ENST00000390944 104 ntBASIC1.95□□□□□ -2.1
TRIM13O60858 RNU6-380P-201ENST00000410207 107 ntBASIC1.95□□□□□ -2.1
TRIM13O60858 RN7SL274P-201ENST00000492268 272 ntBASIC1.95□□□□□ -2.1
TRIM13O60858 FGF7P7-201ENST00000514120 227 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 192.6 ms