Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AL591424.2-201ENST00000617023 128 ntBASIC4.82□□□□□ -1.64
MSH5O43196 MIR6516-201ENST00000630554 81 ntBASIC4.82□□□□□ -1.64
MSH5O43196 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
MSH5O43196 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
MSH5O43196 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
MSH5O43196 SNORD1B-201ENST00000363091 84 ntBASIC4.81□□□□□ -1.64
MSH5O43196 MIR617-201ENST00000385030 97 ntBASIC4.81□□□□□ -1.64
MSH5O43196 SNORD105B-201ENST00000458770 79 ntBASIC4.81□□□□□ -1.64
MSH5O43196 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH5O43196 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH5O43196 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
MSH5O43196 MIR377-201ENST00000362145 69 ntBASIC4.8□□□□□ -1.64
MSH5O43196 SNORA25.8-201ENST00000364831 128 ntBASIC4.8□□□□□ -1.64
MSH5O43196 MIR653-201ENST00000385279 96 ntBASIC4.8□□□□□ -1.64
MSH5O43196 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
MSH5O43196 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
MSH5O43196 AC244505.6-201ENST00000452829 130 ntBASIC4.8□□□□□ -1.64
MSH5O43196 RNA5SP481-201ENST00000516814 122 ntBASIC4.8□□□□□ -1.64
MSH5O43196 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC4.8□□□□□ -1.64
MSH5O43196 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
MSH5O43196 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC4.8□□□□□ -1.64
MSH5O43196 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.79□□□□□ -1.64
MSH5O43196 MAPK10-362ENST00000641864 4484 ntBASIC4.79□□□□□ -1.64
MSH5O43196 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH5O43196 MIR30E-201ENST00000362104 92 ntBASIC4.79□□□□□ -1.64
MSH5O43196 RNU6-250P-201ENST00000516958 103 ntBASIC4.79□□□□□ -1.64
MSH5O43196 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH5O43196 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH5O43196 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH5O43196 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
MSH5O43196 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
MSH5O43196 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
MSH5O43196 RN7SL442P-201ENST00000473804 320 ntBASIC4.78□□□□□ -1.64
MSH5O43196 MIR8057-201ENST00000620957 69 ntBASIC4.78□□□□□ -1.64
MSH5O43196 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
MSH5O43196 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
MSH5O43196 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
MSH5O43196 RNU1-138P-201ENST00000384093 164 ntBASIC4.77□□□□□ -1.65
MSH5O43196 MIR519E-201ENST00000385075 84 ntBASIC4.77□□□□□ -1.65
MSH5O43196 MIR527-201ENST00000385244 85 ntBASIC4.77□□□□□ -1.65
MSH5O43196 AC005326.1-201ENST00000429197 123 ntBASIC4.77□□□□□ -1.65
MSH5O43196 DEFB122-202ENST00000569013 197 ntBASIC4.77□□□□□ -1.65
MSH5O43196 AC022202.1-201ENST00000613515 211 ntBASIC4.77□□□□□ -1.65
MSH5O43196 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
MSH5O43196 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSH5O43196 SNORD9-201ENST00000362566 104 ntBASIC4.76□□□□□ -1.65
MSH5O43196 MIR29C-201ENST00000385231 88 ntBASIC4.76□□□□□ -1.65
MSH5O43196 RNU11-3P-201ENST00000391111 133 ntBASIC4.76□□□□□ -1.65
MSH5O43196 AC108210.2-201ENST00000503681 201 ntBASIC4.76□□□□□ -1.65
MSH5O43196 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.76□□□□□ -1.65
MSH5O43196 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC4.75□□□□□ -1.65
MSH5O43196 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSH5O43196 Y_RNA.74-201ENST00000362911 99 ntBASIC4.75□□□□□ -1.65
MSH5O43196 RNU2-37P-201ENST00000410695 177 ntBASIC4.75□□□□□ -1.65
MSH5O43196 SNRPGP19-201ENST00000603826 189 ntBASIC4.75□□□□□ -1.65
MSH5O43196 AL137849.1-201ENST00000604767 169 ntBASIC4.75□□□□□ -1.65
MSH5O43196 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC4.75□□□□□ -1.65
MSH5O43196 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
MSH5O43196 Y_RNA.282-201ENST00000364793 102 ntBASIC4.74□□□□□ -1.65
MSH5O43196 AC025518.1-201ENST00000479856 347 ntBASIC4.74□□□□□ -1.65
MSH5O43196 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
MSH5O43196 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
MSH5O43196 RNU6-112P-201ENST00000363599 104 ntBASIC4.73□□□□□ -1.65
MSH5O43196 RNU2-27P-201ENST00000516185 142 ntBASIC4.73□□□□□ -1.65
MSH5O43196 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
MSH5O43196 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSH5O43196 MIR199A2-201ENST00000385289 110 ntBASIC4.72□□□□□ -1.65
MSH5O43196 SNORA71B-202ENST00000439232 272 ntBASIC4.72□□□□□ -1.65
MSH5O43196 AC008011.1-201ENST00000545989 227 ntBASIC4.72□□□□□ -1.65
MSH5O43196 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
MSH5O43196 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSH5O43196 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSH5O43196 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSH5O43196 RNU6-246P-201ENST00000384702 107 ntBASIC4.71□□□□□ -1.66
MSH5O43196 CYCSP4-201ENST00000429682 331 ntBASIC4.71□□□□□ -1.66
MSH5O43196 RNU7-26P-201ENST00000458980 63 ntBASIC4.71□□□□□ -1.66
MSH5O43196 snoU13.21-201ENST00000459368 105 ntBASIC4.71□□□□□ -1.66
MSH5O43196 RNA5SP208-201ENST00000516156 78 ntBASIC4.71□□□□□ -1.66
MSH5O43196 AC006386.2-201ENST00000624491 75 ntBASIC4.71□□□□□ -1.66
MSH5O43196 AC012005.1-201ENST00000624575 75 ntBASIC4.71□□□□□ -1.66
MSH5O43196 AL035425.3-201ENST00000564206 4996 ntBASIC4.71□□□□□ -1.66
MSH5O43196 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH5O43196 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH5O43196 RNU6-580P-201ENST00000365159 107 ntBASIC4.7□□□□□ -1.66
MSH5O43196 SNORA15B-2-201ENST00000384058 135 ntBASIC4.7□□□□□ -1.66
MSH5O43196 SNORA15B-1-201ENST00000384334 135 ntBASIC4.7□□□□□ -1.66
MSH5O43196 RNA5SP293-201ENST00000410527 113 ntBASIC4.7□□□□□ -1.66
MSH5O43196 RNU1-41P-201ENST00000516161 162 ntBASIC4.7□□□□□ -1.66
MSH5O43196 RNU6-1206P-201ENST00000516339 103 ntBASIC4.7□□□□□ -1.66
MSH5O43196 RNU1-48P-201ENST00000516400 162 ntBASIC4.7□□□□□ -1.66
MSH5O43196 SNORA70.18-201ENST00000516696 98 ntBASIC4.7□□□□□ -1.66
MSH5O43196 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
MSH5O43196 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH5O43196 RNU6-1123P-201ENST00000362347 106 ntBASIC4.69□□□□□ -1.66
MSH5O43196 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.69□□□□□ -1.66
MSH5O43196 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH5O43196 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH5O43196 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
MSH5O43196 MIR7851-201ENST00000610611 160 ntBASIC4.68□□□□□ -1.66
MSH5O43196 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 201.9 ms