Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRFN1Q9P244 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 KRT8P3-201ENST00000519669 1449 ntBASIC17.3■□□□□ 0.36
LRFN1Q9P244 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRFN1Q9P244 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRFN1Q9P244 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 TEX21P-204ENST00000641479 1693 ntBASIC17.3■□□□□ 0.36
LRFN1Q9P244 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRFN1Q9P244 AL023284.2-201ENST00000405850 579 ntBASIC17.3■□□□□ 0.36
LRFN1Q9P244 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LRFN1Q9P244 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRFN1Q9P244 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 MCCD1P1-208ENST00000445732 328 ntBASIC17.3■□□□□ 0.36
LRFN1Q9P244 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 AL158211.5-201ENST00000623583 2518 ntBASIC17.3■□□□□ 0.36
LRFN1Q9P244 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRFN1Q9P244 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRFN1Q9P244 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.3■□□□□ 0.36
LRFN1Q9P244 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRFN1Q9P244 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
LRFN1Q9P244 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.29■□□□□ 0.36
LRFN1Q9P244 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LRFN1Q9P244 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.29■□□□□ 0.36
LRFN1Q9P244 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.29■□□□□ 0.36
LRFN1Q9P244 AL671277.2-201ENST00000458060 996 ntBASIC17.29■□□□□ 0.36
LRFN1Q9P244 GCSHP2-201ENST00000560971 527 ntBASIC17.29■□□□□ 0.36
LRFN1Q9P244 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 AC091076.1-201ENST00000610741 619 ntBASIC17.29■□□□□ 0.36
LRFN1Q9P244 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.29■□□□□ 0.36
LRFN1Q9P244 AL358472.4-201ENST00000633140 710 ntBASIC17.29■□□□□ 0.36
LRFN1Q9P244 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.29■□□□□ 0.36
LRFN1Q9P244 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.29■□□□□ 0.36
LRFN1Q9P244 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
LRFN1Q9P244 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRFN1Q9P244 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.29■□□□□ 0.36
LRFN1Q9P244 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRFN1Q9P244 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 AC036111.1-201ENST00000533973 1582 ntBASIC17.28■□□□□ 0.36
LRFN1Q9P244 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.28■□□□□ 0.36
LRFN1Q9P244 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
LRFN1Q9P244 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRFN1Q9P244 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRFN1Q9P244 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRFN1Q9P244 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
LRFN1Q9P244 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
LRFN1Q9P244 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRFN1Q9P244 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRFN1Q9P244 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.27■□□□□ 0.36
LRFN1Q9P244 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRFN1Q9P244 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms