Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 AL137013.1-201ENST00000432946 1228 ntBASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 AC008622.2-201ENST00000617006 1229 ntBASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
TRIM39Q9HCM9 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 AC005521.1-201ENST00000393351 872 ntBASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 LIN28AP1-201ENST00000429574 405 ntBASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM39Q9HCM9 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 TERF1P1-201ENST00000311003 1181 ntBASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 AL512604.3-201ENST00000569583 964 ntBASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 AC073508.3-201ENST00000619697 1419 ntBASIC18.66■□□□□ 0.58
TRIM39Q9HCM9 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 RCN1P1-201ENST00000400413 996 ntBASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 FAM210CP-201ENST00000445714 574 ntBASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 AC010203.1-204ENST00000548782 407 ntBASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 AC092865.7-201ENST00000641832 219 ntBASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM39Q9HCM9 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TRIM39Q9HCM9 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
TRIM39Q9HCM9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms