Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PAM16-208ENST00000573553 722 ntTSL 2 BASIC31.25■■■□□ 2.59
IFT140Q96RY7 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
IFT140Q96RY7 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
IFT140Q96RY7 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
IFT140Q96RY7 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
IFT140Q96RY7 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
IFT140Q96RY7 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
IFT140Q96RY7 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
IFT140Q96RY7 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC31.24■■■□□ 2.59
IFT140Q96RY7 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC31.24■■■□□ 2.59
IFT140Q96RY7 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
IFT140Q96RY7 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC31.24■■■□□ 2.59
IFT140Q96RY7 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC31.24■■■□□ 2.59
IFT140Q96RY7 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
IFT140Q96RY7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
IFT140Q96RY7 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
IFT140Q96RY7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
IFT140Q96RY7 AC079834.2-201ENST00000609776 1949 ntBASIC31.23■■■□□ 2.59
IFT140Q96RY7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC31.23■■■□□ 2.59
IFT140Q96RY7 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC31.23■■■□□ 2.59
IFT140Q96RY7 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC31.23■■■□□ 2.59
IFT140Q96RY7 DHDH-204ENST00000523250 634 ntTSL 5 BASIC31.23■■■□□ 2.59
IFT140Q96RY7 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC31.23■■■□□ 2.59
IFT140Q96RY7 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
IFT140Q96RY7 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC31.23■■■□□ 2.59
IFT140Q96RY7 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC31.23■■■□□ 2.59
IFT140Q96RY7 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC31.23■■■□□ 2.59
IFT140Q96RY7 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC31.23■■■□□ 2.59
IFT140Q96RY7 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
IFT140Q96RY7 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
IFT140Q96RY7 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
IFT140Q96RY7 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
IFT140Q96RY7 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
IFT140Q96RY7 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
IFT140Q96RY7 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
IFT140Q96RY7 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC31.22■■■□□ 2.59
IFT140Q96RY7 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
IFT140Q96RY7 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC31.22■■■□□ 2.59
IFT140Q96RY7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC31.22■■■□□ 2.59
IFT140Q96RY7 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC31.22■■■□□ 2.59
IFT140Q96RY7 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC31.22■■■□□ 2.59
IFT140Q96RY7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC31.22■■■□□ 2.59
IFT140Q96RY7 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
IFT140Q96RY7 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
IFT140Q96RY7 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
IFT140Q96RY7 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
IFT140Q96RY7 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC31.22■■■□□ 2.59
IFT140Q96RY7 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
IFT140Q96RY7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
IFT140Q96RY7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
IFT140Q96RY7 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
IFT140Q96RY7 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 AC132008.2-207ENST00000454517 770 ntBASIC31.21■■■□□ 2.59
IFT140Q96RY7 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
IFT140Q96RY7 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
IFT140Q96RY7 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
IFT140Q96RY7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
IFT140Q96RY7 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
IFT140Q96RY7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
IFT140Q96RY7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 THAP5-204ENST00000438865 868 ntTSL 2 BASIC31.21■■■□□ 2.59
IFT140Q96RY7 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
IFT140Q96RY7 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
IFT140Q96RY7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC31.2■■■□□ 2.59
IFT140Q96RY7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
IFT140Q96RY7 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
IFT140Q96RY7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC31.2■■■□□ 2.59
IFT140Q96RY7 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC31.2■■■□□ 2.59
IFT140Q96RY7 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
IFT140Q96RY7 TREX1-205ENST00000625293 1783 ntBASIC31.2■■■□□ 2.59
IFT140Q96RY7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
IFT140Q96RY7 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
IFT140Q96RY7 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC31.2■■■□□ 2.58
IFT140Q96RY7 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC31.2■■■□□ 2.58
IFT140Q96RY7 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC31.2■■■□□ 2.58
IFT140Q96RY7 PAN3-AS1-201ENST00000563843 1351 ntBASIC31.2■■■□□ 2.58
IFT140Q96RY7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC31.2■■■□□ 2.58
IFT140Q96RY7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
IFT140Q96RY7 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
IFT140Q96RY7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
IFT140Q96RY7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
IFT140Q96RY7 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
IFT140Q96RY7 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
IFT140Q96RY7 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
IFT140Q96RY7 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC31.19■■■□□ 2.58
IFT140Q96RY7 DNAJB3-201ENST00000446806 729 ntBASIC31.19■■■□□ 2.58
IFT140Q96RY7 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC31.19■■■□□ 2.58
IFT140Q96RY7 NAT14-202ENST00000587400 416 ntTSL 5 BASIC31.19■■■□□ 2.58
IFT140Q96RY7 AC005336.2-201ENST00000593183 939 ntBASIC31.19■■■□□ 2.58
IFT140Q96RY7 AP001269.4-201ENST00000609611 512 ntBASIC31.19■■■□□ 2.58
IFT140Q96RY7 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
IFT140Q96RY7 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms