Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.2■□□□□ 0.02
CX3CL1P78423 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 AC233702.5-201ENST00000584107 538 ntBASIC15.2■□□□□ 0.02
CX3CL1P78423 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 Z99916.2-201ENST00000604037 246 ntBASIC15.2■□□□□ 0.02
CX3CL1P78423 ABBA01031674.1-201ENST00000635145 728 ntBASIC15.2■□□□□ 0.02
CX3CL1P78423 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC15.2■□□□□ 0.02
CX3CL1P78423 AP006294.2-201ENST00000641667 209 ntBASIC15.2■□□□□ 0.02
CX3CL1P78423 KRT8P41-201ENST00000533985 1514 ntBASIC15.2■□□□□ 0.02
CX3CL1P78423 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CX3CL1P78423 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 AC079598.2-202ENST00000546624 1451 ntBASIC15.2■□□□□ 0.02
CX3CL1P78423 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CX3CL1P78423 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC15.19■□□□□ 0.02
CX3CL1P78423 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
CX3CL1P78423 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CX3CL1P78423 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.19■□□□□ 0.02
CX3CL1P78423 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.19■□□□□ 0.02
CX3CL1P78423 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CX3CL1P78423 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
CX3CL1P78423 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CX3CL1P78423 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC15.19■□□□□ 0.02
CX3CL1P78423 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 TSPY21P-201ENST00000433481 731 ntBASIC15.19■□□□□ 0.02
CX3CL1P78423 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.19■□□□□ 0.02
CX3CL1P78423 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 AC008550.1-201ENST00000511500 884 ntBASIC15.19■□□□□ 0.02
CX3CL1P78423 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC15.19■□□□□ 0.02
CX3CL1P78423 AC026271.3-201ENST00000571884 352 ntBASIC15.19■□□□□ 0.02
CX3CL1P78423 AL049637.2-201ENST00000641778 930 ntBASIC15.19■□□□□ 0.02
CX3CL1P78423 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.19■□□□□ 0.02
CX3CL1P78423 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CX3CL1P78423 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CX3CL1P78423 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.19■□□□□ 0.02
CX3CL1P78423 AC005332.8-201ENST00000622750 2735 ntBASIC15.19■□□□□ 0.02
CX3CL1P78423 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CX3CL1P78423 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
CX3CL1P78423 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CX3CL1P78423 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CX3CL1P78423 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 SRI-203ENST00000419179 1307 ntTSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CX3CL1P78423 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC15.18■□□□□ 0.02
CX3CL1P78423 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC15.18■□□□□ 0.02
CX3CL1P78423 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 MIR718-201ENST00000390190 70 ntBASIC15.18■□□□□ 0.02
CX3CL1P78423 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.18■□□□□ 0.02
CX3CL1P78423 AC004951.3-201ENST00000418645 1148 ntBASIC15.18■□□□□ 0.02
CX3CL1P78423 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC15.18■□□□□ 0.02
CX3CL1P78423 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.18■□□□□ 0.02
CX3CL1P78423 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.18■□□□□ 0.02
CX3CL1P78423 AC113410.3-201ENST00000623366 203 ntBASIC15.18■□□□□ 0.02
CX3CL1P78423 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CX3CL1P78423 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC15.18■□□□□ 0.02
CX3CL1P78423 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
CX3CL1P78423 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CX3CL1P78423 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
CX3CL1P78423 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
CX3CL1P78423 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CX3CL1P78423 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CX3CL1P78423 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CX3CL1P78423 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CX3CL1P78423 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms