Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.13■□□□□ 0.97
TPM4P67936 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.13■□□□□ 0.97
TPM4P67936 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.13■□□□□ 0.97
TPM4P67936 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
TPM4P67936 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TPM4P67936 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TPM4P67936 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TPM4P67936 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
TPM4P67936 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.13■□□□□ 0.97
TPM4P67936 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TPM4P67936 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.13■□□□□ 0.97
TPM4P67936 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.12■□□□□ 0.97
TPM4P67936 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.12■□□□□ 0.97
TPM4P67936 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.12■□□□□ 0.97
TPM4P67936 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.12■□□□□ 0.97
TPM4P67936 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
TPM4P67936 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.12■□□□□ 0.97
TPM4P67936 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.12■□□□□ 0.97
TPM4P67936 TSPY21P-201ENST00000433481 731 ntBASIC21.12■□□□□ 0.97
TPM4P67936 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.12■□□□□ 0.97
TPM4P67936 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.12■□□□□ 0.97
TPM4P67936 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.12■□□□□ 0.97
TPM4P67936 AC073592.3-201ENST00000625118 1834 ntBASIC21.12■□□□□ 0.97
TPM4P67936 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TPM4P67936 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.12■□□□□ 0.97
TPM4P67936 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.12■□□□□ 0.97
TPM4P67936 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TPM4P67936 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
TPM4P67936 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC21.11■□□□□ 0.97
TPM4P67936 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.11■□□□□ 0.97
TPM4P67936 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
TPM4P67936 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
TPM4P67936 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.11■□□□□ 0.97
TPM4P67936 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.11■□□□□ 0.97
TPM4P67936 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.11■□□□□ 0.97
TPM4P67936 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.11■□□□□ 0.97
TPM4P67936 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TPM4P67936 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TPM4P67936 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
TPM4P67936 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
TPM4P67936 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TPM4P67936 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.1■□□□□ 0.97
TPM4P67936 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TPM4P67936 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TPM4P67936 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.1■□□□□ 0.97
TPM4P67936 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM4P67936 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM4P67936 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
TPM4P67936 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
TPM4P67936 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TPM4P67936 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM4P67936 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TPM4P67936 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.1■□□□□ 0.97
TPM4P67936 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.1■□□□□ 0.97
TPM4P67936 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.1■□□□□ 0.97
TPM4P67936 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.1■□□□□ 0.97
TPM4P67936 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.1■□□□□ 0.97
TPM4P67936 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM4P67936 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM4P67936 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
TPM4P67936 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC21.1■□□□□ 0.97
TPM4P67936 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
TPM4P67936 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TPM4P67936 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM4P67936 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM4P67936 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms