Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.77■■□□□ 1.08
HMGCS2P54868 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC21.77■■□□□ 1.08
HMGCS2P54868 IFNL4P1-201ENST00000607083 540 ntBASIC21.77■■□□□ 1.08
HMGCS2P54868 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
HMGCS2P54868 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
HMGCS2P54868 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 PCDHAC2-203ENST00000615316 3011 ntBASIC21.77■■□□□ 1.07
HMGCS2P54868 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
HMGCS2P54868 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
HMGCS2P54868 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGCS2P54868 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
HMGCS2P54868 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGCS2P54868 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
HMGCS2P54868 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC21.76■■□□□ 1.07
HMGCS2P54868 LINC00265-3P-201ENST00000447588 903 ntBASIC21.76■■□□□ 1.07
HMGCS2P54868 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.76■■□□□ 1.07
HMGCS2P54868 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGCS2P54868 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.76■■□□□ 1.07
HMGCS2P54868 AP000867.3-201ENST00000524675 377 ntBASIC21.76■■□□□ 1.07
HMGCS2P54868 AC104390.1-201ENST00000555663 520 ntBASIC21.76■■□□□ 1.07
HMGCS2P54868 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.76■■□□□ 1.07
HMGCS2P54868 AL732292.2-201ENST00000609649 430 ntBASIC21.76■■□□□ 1.07
HMGCS2P54868 LITAF-220ENST00000620789 692 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGCS2P54868 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.76■■□□□ 1.07
HMGCS2P54868 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGCS2P54868 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HMGCS2P54868 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.76■■□□□ 1.07
HMGCS2P54868 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGCS2P54868 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.75■■□□□ 1.07
HMGCS2P54868 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.75■■□□□ 1.07
HMGCS2P54868 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.75■■□□□ 1.07
HMGCS2P54868 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGCS2P54868 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HMGCS2P54868 HOXB1-202ENST00000577092 1414 ntBASIC21.75■■□□□ 1.07
HMGCS2P54868 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGCS2P54868 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGCS2P54868 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
HMGCS2P54868 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.75■■□□□ 1.07
HMGCS2P54868 DRAXINP1-201ENST00000437611 948 ntBASIC21.75■■□□□ 1.07
HMGCS2P54868 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGCS2P54868 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HMGCS2P54868 CIB2-208ENST00000560618 804 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGCS2P54868 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGCS2P54868 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
HMGCS2P54868 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGCS2P54868 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
HMGCS2P54868 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGCS2P54868 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGCS2P54868 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC21.74■■□□□ 1.07
HMGCS2P54868 KRT8P7-201ENST00000533003 1432 ntBASIC21.74■■□□□ 1.07
HMGCS2P54868 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 Z83836.1-201ENST00000624605 1642 ntBASIC21.74■■□□□ 1.07
HMGCS2P54868 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.74■■□□□ 1.07
HMGCS2P54868 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGCS2P54868 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
HMGCS2P54868 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 FAAHP1-202ENST00000446499 1238 ntBASIC21.74■■□□□ 1.07
HMGCS2P54868 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
HMGCS2P54868 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 PNN-202ENST00000553331 656 ntTSL 3 BASIC21.74■■□□□ 1.07
HMGCS2P54868 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.74■■□□□ 1.07
HMGCS2P54868 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
HMGCS2P54868 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.74■■□□□ 1.07
HMGCS2P54868 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGCS2P54868 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
HMGCS2P54868 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.74■■□□□ 1.07
HMGCS2P54868 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGCS2P54868 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.73■■□□□ 1.07
HMGCS2P54868 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 AC125437.2-201ENST00000625180 2167 ntBASIC21.73■■□□□ 1.07
HMGCS2P54868 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HMGCS2P54868 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms