Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMK1P53667 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMK1P53667 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMK1P53667 AL162741.1-201ENST00000565563 1558 ntBASIC18.63■□□□□ 0.57
LIMK1P53667 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMK1P53667 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMK1P53667 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMK1P53667 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMK1P53667 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMK1P53667 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
LIMK1P53667 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMK1P53667 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.62■□□□□ 0.57
LIMK1P53667 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.62■□□□□ 0.57
LIMK1P53667 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.62■□□□□ 0.57
LIMK1P53667 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMK1P53667 HLA-A-201ENST00000376802 1334 ntBASIC18.62■□□□□ 0.57
LIMK1P53667 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMK1P53667 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMK1P53667 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.62■□□□□ 0.57
LIMK1P53667 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMK1P53667 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
LIMK1P53667 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMK1P53667 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMK1P53667 AC098818.2-201ENST00000564925 2320 ntBASIC18.61■□□□□ 0.57
LIMK1P53667 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIMK1P53667 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMK1P53667 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMK1P53667 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMK1P53667 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMK1P53667 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMK1P53667 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.61■□□□□ 0.57
LIMK1P53667 MRPL3P1-201ENST00000400109 1033 ntBASIC18.61■□□□□ 0.57
LIMK1P53667 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMK1P53667 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMK1P53667 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.61■□□□□ 0.57
LIMK1P53667 FOSL1P1-201ENST00000511041 816 ntBASIC18.61■□□□□ 0.57
LIMK1P53667 AP000867.3-201ENST00000524675 377 ntBASIC18.61■□□□□ 0.57
LIMK1P53667 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMK1P53667 MIR4674-201ENST00000582457 87 ntBASIC18.61■□□□□ 0.57
LIMK1P53667 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMK1P53667 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LIMK1P53667 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMK1P53667 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMK1P53667 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMK1P53667 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMK1P53667 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIMK1P53667 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LIMK1P53667 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMK1P53667 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMK1P53667 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMK1P53667 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMK1P53667 AC099778.1-201ENST00000568593 1911 ntBASIC18.61■□□□□ 0.57
LIMK1P53667 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMK1P53667 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
LIMK1P53667 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMK1P53667 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 KRT8P11-201ENST00000409686 1436 ntBASIC18.6■□□□□ 0.57
LIMK1P53667 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMK1P53667 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
LIMK1P53667 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIMK1P53667 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LIMK1P53667 AL590627.1-203ENST00000421194 1026 ntBASIC18.6■□□□□ 0.57
LIMK1P53667 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.6■□□□□ 0.57
LIMK1P53667 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMK1P53667 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMK1P53667 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.6■□□□□ 0.57
LIMK1P53667 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMK1P53667 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMK1P53667 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LIMK1P53667 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMK1P53667 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms