Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH6P52701 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC26.08■■□□□ 1.77
MSH6P52701 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
MSH6P52701 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC26.08■■□□□ 1.77
MSH6P52701 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC26.08■■□□□ 1.77
MSH6P52701 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC26.08■■□□□ 1.77
MSH6P52701 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
MSH6P52701 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH6P52701 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC26.08■■□□□ 1.77
MSH6P52701 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
MSH6P52701 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH6P52701 EFS-203ENST00000429593 2610 ntTSL 2 BASIC26.08■■□□□ 1.77
MSH6P52701 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC26.08■■□□□ 1.76
MSH6P52701 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC26.08■■□□□ 1.76
MSH6P52701 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
MSH6P52701 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC26.07■■□□□ 1.76
MSH6P52701 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC26.07■■□□□ 1.76
MSH6P52701 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC26.07■■□□□ 1.76
MSH6P52701 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC26.07■■□□□ 1.76
MSH6P52701 BNIP3P18-201ENST00000593976 575 ntBASIC26.07■■□□□ 1.76
MSH6P52701 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
MSH6P52701 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC26.07■■□□□ 1.76
MSH6P52701 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC26.07■■□□□ 1.76
MSH6P52701 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC26.07■■□□□ 1.76
MSH6P52701 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC26.07■■□□□ 1.76
MSH6P52701 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
MSH6P52701 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
MSH6P52701 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC26.07■■□□□ 1.76
MSH6P52701 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC26.07■■□□□ 1.76
MSH6P52701 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC26.07■■□□□ 1.76
MSH6P52701 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC26.07■■□□□ 1.76
MSH6P52701 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC26.07■■□□□ 1.76
MSH6P52701 AL591684.3-201ENST00000605187 298 ntBASIC26.07■■□□□ 1.76
MSH6P52701 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
MSH6P52701 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC26.07■■□□□ 1.76
MSH6P52701 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH6P52701 GOLGA6L5P-202ENST00000515341 1828 ntBASIC26.06■■□□□ 1.76
MSH6P52701 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC26.06■■□□□ 1.76
MSH6P52701 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC26.06■■□□□ 1.76
MSH6P52701 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH6P52701 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
MSH6P52701 PBK-203ENST00000522944 1499 ntTSL 2 BASIC26.06■■□□□ 1.76
MSH6P52701 ZNF815P-204ENST00000434898 1737 ntBASIC26.06■■□□□ 1.76
MSH6P52701 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH6P52701 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH6P52701 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
MSH6P52701 HES2-202ENST00000377836 507 ntTSL 2 BASIC26.06■■□□□ 1.76
MSH6P52701 UPF3AP3-201ENST00000420996 769 ntBASIC26.06■■□□□ 1.76
MSH6P52701 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC26.06■■□□□ 1.76
MSH6P52701 AP001160.2-201ENST00000596071 487 ntBASIC26.06■■□□□ 1.76
MSH6P52701 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH6P52701 CAND2-206ENST00000626378 333 ntTSL 5 BASIC26.06■■□□□ 1.76
MSH6P52701 FAM215A-202ENST00000632077 792 ntBASIC26.06■■□□□ 1.76
MSH6P52701 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
MSH6P52701 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH6P52701 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC26.05■■□□□ 1.76
MSH6P52701 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
MSH6P52701 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
MSH6P52701 GAS2L1P1-201ENST00000420145 1480 ntBASIC26.05■■□□□ 1.76
MSH6P52701 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
MSH6P52701 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH6P52701 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
MSH6P52701 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
MSH6P52701 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC26.05■■□□□ 1.76
MSH6P52701 HNRNPA1P28-201ENST00000424481 961 ntBASIC26.05■■□□□ 1.76
MSH6P52701 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH6P52701 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH6P52701 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
MSH6P52701 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC26.04■■□□□ 1.76
MSH6P52701 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC26.04■■□□□ 1.76
MSH6P52701 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
MSH6P52701 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
MSH6P52701 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC26.04■■□□□ 1.76
MSH6P52701 URGCP-206ENST00000446958 365 ntTSL 2 BASIC26.04■■□□□ 1.76
MSH6P52701 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
MSH6P52701 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC26.04■■□□□ 1.76
MSH6P52701 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC26.04■■□□□ 1.76
MSH6P52701 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC26.04■■□□□ 1.76
MSH6P52701 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
MSH6P52701 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
MSH6P52701 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms