Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
HTTP42858 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HTTP42858 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HTTP42858 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
HTTP42858 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 MCCD1P1-208ENST00000445732 328 ntBASIC21.2■□□□□ 0.98
HTTP42858 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC21.2■□□□□ 0.98
HTTP42858 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.2■□□□□ 0.98
HTTP42858 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC21.2■□□□□ 0.98
HTTP42858 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.2■□□□□ 0.98
HTTP42858 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.2■□□□□ 0.98
HTTP42858 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.2■□□□□ 0.98
HTTP42858 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.2■□□□□ 0.98
HTTP42858 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HTTP42858 AC096582.2-201ENST00000510860 516 ntBASIC21.2■□□□□ 0.98
HTTP42858 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21.2■□□□□ 0.98
HTTP42858 AC112907.3-201ENST00000577781 2400 ntBASIC21.19■□□□□ 0.98
HTTP42858 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.19■□□□□ 0.98
HTTP42858 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.19■□□□□ 0.98
HTTP42858 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HTTP42858 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HTTP42858 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
HTTP42858 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC21.19■□□□□ 0.98
HTTP42858 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HTTP42858 FIS1-203ENST00000442303 631 ntTSL 3 BASIC21.19■□□□□ 0.98
HTTP42858 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
HTTP42858 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HTTP42858 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HTTP42858 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HTTP42858 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.19■□□□□ 0.98
HTTP42858 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HTTP42858 AC116407.3-201ENST00000623905 1129 ntBASIC21.19■□□□□ 0.98
HTTP42858 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HTTP42858 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 IGHGP-201ENST00000390555 1178 ntBASIC21.18■□□□□ 0.98
HTTP42858 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 AC034105.1-201ENST00000563488 319 ntBASIC21.18■□□□□ 0.98
HTTP42858 AC145285.3-201ENST00000564603 959 ntBASIC21.18■□□□□ 0.98
HTTP42858 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC21.18■□□□□ 0.98
HTTP42858 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
HTTP42858 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC21.18■□□□□ 0.98
HTTP42858 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
HTTP42858 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.18■□□□□ 0.98
HTTP42858 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
HTTP42858 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.18■□□□□ 0.98
HTTP42858 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
HTTP42858 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.18■□□□□ 0.98
HTTP42858 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HTTP42858 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC21.18■□□□□ 0.98
HTTP42858 AC004967.1-201ENST00000453589 447 ntBASIC21.18■□□□□ 0.98
HTTP42858 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC21.18■□□□□ 0.98
HTTP42858 FAM197Y3-203ENST00000618346 717 ntBASIC21.18■□□□□ 0.98
HTTP42858 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HTTP42858 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.17■□□□□ 0.98
HTTP42858 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.17■□□□□ 0.98
HTTP42858 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC21.17■□□□□ 0.98
HTTP42858 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HTTP42858 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.17■□□□□ 0.98
HTTP42858 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
HTTP42858 AC010240.3-201ENST00000607688 395 ntBASIC21.17■□□□□ 0.98
HTTP42858 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HTTP42858 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HTTP42858 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HTTP42858 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HTTP42858 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
HTTP42858 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HTTP42858 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HTTP42858 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HTTP42858 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.17■□□□□ 0.98
HTTP42858 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC21.17■□□□□ 0.98
HTTP42858 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HTTP42858 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC21.16■□□□□ 0.98
HTTP42858 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.16■□□□□ 0.98
HTTP42858 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
HTTP42858 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.16■□□□□ 0.98
HTTP42858 AC104109.2-201ENST00000602919 1418 ntBASIC21.16■□□□□ 0.98
HTTP42858 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
HTTP42858 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms