Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BDNFP23560 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.88■□□□□ 0.77
BDNFP23560 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BDNFP23560 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.88■□□□□ 0.77
BDNFP23560 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.88■□□□□ 0.77
BDNFP23560 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
BDNFP23560 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
BDNFP23560 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BDNFP23560 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.88■□□□□ 0.77
BDNFP23560 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.88■□□□□ 0.77
BDNFP23560 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
BDNFP23560 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
BDNFP23560 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BDNFP23560 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.87■□□□□ 0.77
BDNFP23560 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BDNFP23560 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
BDNFP23560 AL161938.1-201ENST00000569833 2180 ntBASIC19.87■□□□□ 0.77
BDNFP23560 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.87■□□□□ 0.77
BDNFP23560 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.87■□□□□ 0.77
BDNFP23560 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.87■□□□□ 0.77
BDNFP23560 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.87■□□□□ 0.77
BDNFP23560 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.87■□□□□ 0.77
BDNFP23560 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
BDNFP23560 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.87■□□□□ 0.77
BDNFP23560 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
BDNFP23560 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.87■□□□□ 0.77
BDNFP23560 NEK4P2-201ENST00000580004 1012 ntBASIC19.87■□□□□ 0.77
BDNFP23560 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.87■□□□□ 0.77
BDNFP23560 MIR3180-5-201ENST00000583743 153 ntBASIC19.87■□□□□ 0.77
BDNFP23560 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.87■□□□□ 0.77
BDNFP23560 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BDNFP23560 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.87■□□□□ 0.77
BDNFP23560 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
BDNFP23560 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
BDNFP23560 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
BDNFP23560 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
BDNFP23560 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BDNFP23560 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.87■□□□□ 0.77
BDNFP23560 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BDNFP23560 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BDNFP23560 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.86■□□□□ 0.77
BDNFP23560 AL049812.1-201ENST00000432563 2267 ntBASIC19.86■□□□□ 0.77
BDNFP23560 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BDNFP23560 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.86■□□□□ 0.77
BDNFP23560 AP000523.1-201ENST00000398242 1049 ntBASIC19.86■□□□□ 0.77
BDNFP23560 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.86■□□□□ 0.77
BDNFP23560 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BDNFP23560 AC092647.4-201ENST00000457211 535 ntBASIC19.86■□□□□ 0.77
BDNFP23560 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.86■□□□□ 0.77
BDNFP23560 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.86■□□□□ 0.77
BDNFP23560 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.86■□□□□ 0.77
BDNFP23560 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BDNFP23560 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.86■□□□□ 0.77
BDNFP23560 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.86■□□□□ 0.77
BDNFP23560 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
BDNFP23560 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.86■□□□□ 0.77
BDNFP23560 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
BDNFP23560 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BDNFP23560 AC008556.1-201ENST00000610908 2040 ntBASIC19.86■□□□□ 0.77
BDNFP23560 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BDNFP23560 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
BDNFP23560 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
BDNFP23560 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
BDNFP23560 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.85■□□□□ 0.77
BDNFP23560 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BDNFP23560 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BDNFP23560 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BDNFP23560 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
BDNFP23560 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.85■□□□□ 0.77
BDNFP23560 FAM8A6P-201ENST00000407496 1135 ntBASIC19.85■□□□□ 0.77
BDNFP23560 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.85■□□□□ 0.77
BDNFP23560 GCSHP2-201ENST00000560971 527 ntBASIC19.85■□□□□ 0.77
BDNFP23560 LINC01238-205ENST00000567549 1107 ntBASIC19.85■□□□□ 0.77
BDNFP23560 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.85■□□□□ 0.77
BDNFP23560 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
BDNFP23560 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.85■□□□□ 0.77
BDNFP23560 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.85■□□□□ 0.77
BDNFP23560 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
BDNFP23560 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
BDNFP23560 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BDNFP23560 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BDNFP23560 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BDNFP23560 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.85■□□□□ 0.77
BDNFP23560 KRT8P32-201ENST00000512863 1461 ntBASIC19.85■□□□□ 0.77
BDNFP23560 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
BDNFP23560 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.84■□□□□ 0.77
BDNFP23560 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.84■□□□□ 0.77
BDNFP23560 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.84■□□□□ 0.77
BDNFP23560 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.84■□□□□ 0.77
BDNFP23560 AC087388.1-201ENST00000571370 1112 ntBASIC19.84■□□□□ 0.77
BDNFP23560 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
BDNFP23560 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
BDNFP23560 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
BDNFP23560 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms