Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
COL5A1P20908 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.11■□□□□ 0.49
COL5A1P20908 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.11■□□□□ 0.49
COL5A1P20908 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.11■□□□□ 0.49
COL5A1P20908 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A1P20908 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL5A1P20908 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A1P20908 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A1P20908 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A1P20908 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL5A1P20908 LINC00167-201ENST00000530583 1419 ntBASIC18.1■□□□□ 0.49
COL5A1P20908 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A1P20908 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A1P20908 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
COL5A1P20908 AL662844.1-201ENST00000546340 181 ntBASIC18.1■□□□□ 0.49
COL5A1P20908 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL5A1P20908 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A1P20908 AL390719.2-201ENST00000606993 987 ntBASIC18.1■□□□□ 0.49
COL5A1P20908 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A1P20908 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL5A1P20908 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.1■□□□□ 0.49
COL5A1P20908 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL5A1P20908 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A1P20908 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
COL5A1P20908 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.09■□□□□ 0.49
COL5A1P20908 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 GPALPP1-207ENST00000611650 899 ntBASIC18.09■□□□□ 0.49
COL5A1P20908 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL5A1P20908 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL5A1P20908 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A1P20908 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
COL5A1P20908 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.09■□□□□ 0.49
COL5A1P20908 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
COL5A1P20908 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.09■□□□□ 0.49
COL5A1P20908 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.09■□□□□ 0.49
COL5A1P20908 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
COL5A1P20908 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.09■□□□□ 0.49
COL5A1P20908 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
COL5A1P20908 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.09■□□□□ 0.49
COL5A1P20908 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 AL109659.2-201ENST00000606809 1674 ntBASIC18.09■□□□□ 0.49
COL5A1P20908 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL5A1P20908 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.08■□□□□ 0.49
COL5A1P20908 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
COL5A1P20908 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A1P20908 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A1P20908 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A1P20908 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.08■□□□□ 0.49
COL5A1P20908 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A1P20908 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A1P20908 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
COL5A1P20908 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A1P20908 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL5A1P20908 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A1P20908 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A1P20908 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A1P20908 KRT18P23-201ENST00000435622 1283 ntBASIC18.08■□□□□ 0.48
COL5A1P20908 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.08■□□□□ 0.48
COL5A1P20908 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A1P20908 AC090616.6-201ENST00000582640 721 ntBASIC18.08■□□□□ 0.48
COL5A1P20908 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.08■□□□□ 0.48
COL5A1P20908 AC138894.3-201ENST00000603787 634 ntBASIC18.08■□□□□ 0.48
COL5A1P20908 AC120114.3-201ENST00000611923 658 ntBASIC18.08■□□□□ 0.48
COL5A1P20908 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.08■□□□□ 0.48
COL5A1P20908 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.08■□□□□ 0.48
COL5A1P20908 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A1P20908 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.08■□□□□ 0.48
COL5A1P20908 Z83836.1-201ENST00000624605 1642 ntBASIC18.08■□□□□ 0.48
COL5A1P20908 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL5A1P20908 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A1P20908 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL5A1P20908 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms