Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH3P20585 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.78■□□□□ 0.6
MSH3P20585 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
MSH3P20585 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.77■□□□□ 0.6
MSH3P20585 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
MSH3P20585 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.77■□□□□ 0.6
MSH3P20585 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.77■□□□□ 0.6
MSH3P20585 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.77■□□□□ 0.6
MSH3P20585 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.77■□□□□ 0.6
MSH3P20585 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.77■□□□□ 0.6
MSH3P20585 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.77■□□□□ 0.6
MSH3P20585 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.77■□□□□ 0.6
MSH3P20585 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.77■□□□□ 0.6
MSH3P20585 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
MSH3P20585 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSH3P20585 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
MSH3P20585 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.77■□□□□ 0.59
MSH3P20585 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
MSH3P20585 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
MSH3P20585 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
MSH3P20585 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
MSH3P20585 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
MSH3P20585 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
MSH3P20585 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH3P20585 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH3P20585 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.76■□□□□ 0.59
MSH3P20585 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH3P20585 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH3P20585 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MSH3P20585 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.76■□□□□ 0.59
MSH3P20585 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MSH3P20585 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.76■□□□□ 0.59
MSH3P20585 NAPSB-206ENST00000562112 1266 ntBASIC18.76■□□□□ 0.59
MSH3P20585 AC073912.3-201ENST00000624414 853 ntBASIC18.76■□□□□ 0.59
MSH3P20585 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
MSH3P20585 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
MSH3P20585 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH3P20585 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.76■□□□□ 0.59
MSH3P20585 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH3P20585 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.76■□□□□ 0.59
MSH3P20585 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.76■□□□□ 0.59
MSH3P20585 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.75■□□□□ 0.59
MSH3P20585 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.75■□□□□ 0.59
MSH3P20585 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.75■□□□□ 0.59
MSH3P20585 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
MSH3P20585 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.75■□□□□ 0.59
MSH3P20585 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.75■□□□□ 0.59
MSH3P20585 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
MSH3P20585 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.75■□□□□ 0.59
MSH3P20585 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.75■□□□□ 0.59
MSH3P20585 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
MSH3P20585 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH3P20585 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.74■□□□□ 0.59
MSH3P20585 KRT8P9-201ENST00000558927 1449 ntBASIC18.74■□□□□ 0.59
MSH3P20585 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.74■□□□□ 0.59
MSH3P20585 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
MSH3P20585 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
MSH3P20585 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.74■□□□□ 0.59
MSH3P20585 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.74■□□□□ 0.59
MSH3P20585 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 AC087499.1-201ENST00000418141 1075 ntBASIC18.74■□□□□ 0.59
MSH3P20585 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.74■□□□□ 0.59
MSH3P20585 CA15P1-201ENST00000481698 905 ntBASIC18.74■□□□□ 0.59
MSH3P20585 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.74■□□□□ 0.59
MSH3P20585 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
MSH3P20585 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.74■□□□□ 0.59
MSH3P20585 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms