Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC4P09017 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC4P09017 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC4P09017 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.4■□□□□ 0.54
HOXC4P09017 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC4P09017 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC4P09017 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC4P09017 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.4■□□□□ 0.54
HOXC4P09017 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.4■□□□□ 0.54
HOXC4P09017 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.4■□□□□ 0.54
HOXC4P09017 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC4P09017 AC005332.1-201ENST00000577698 1310 ntBASIC18.4■□□□□ 0.54
HOXC4P09017 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC4P09017 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC4P09017 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.4■□□□□ 0.54
HOXC4P09017 HEIH-201ENST00000623091 1652 ntBASIC18.4■□□□□ 0.54
HOXC4P09017 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC4P09017 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HOXC4P09017 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.4■□□□□ 0.54
HOXC4P09017 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
HOXC4P09017 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
HOXC4P09017 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
HOXC4P09017 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
HOXC4P09017 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.39■□□□□ 0.53
HOXC4P09017 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
HOXC4P09017 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.39■□□□□ 0.53
HOXC4P09017 KRT18P41-201ENST00000518924 1277 ntBASIC18.39■□□□□ 0.53
HOXC4P09017 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
HOXC4P09017 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.39■□□□□ 0.53
HOXC4P09017 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.39■□□□□ 0.53
HOXC4P09017 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.39■□□□□ 0.53
HOXC4P09017 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.39■□□□□ 0.53
HOXC4P09017 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.39■□□□□ 0.53
HOXC4P09017 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 IER3-202ENST00000376377 1350 ntBASIC18.39■□□□□ 0.53
HOXC4P09017 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC4P09017 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.39■□□□□ 0.53
HOXC4P09017 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HOXC4P09017 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.38■□□□□ 0.53
HOXC4P09017 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HOXC4P09017 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC4P09017 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC4P09017 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.38■□□□□ 0.53
HOXC4P09017 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.38■□□□□ 0.53
HOXC4P09017 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.38■□□□□ 0.53
HOXC4P09017 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.38■□□□□ 0.53
HOXC4P09017 VENTXP5-201ENST00000523979 775 ntBASIC18.38■□□□□ 0.53
HOXC4P09017 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC4P09017 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.38■□□□□ 0.53
HOXC4P09017 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.38■□□□□ 0.53
HOXC4P09017 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.38■□□□□ 0.53
HOXC4P09017 AC007952.6-201ENST00000573168 2673 ntBASIC18.38■□□□□ 0.53
HOXC4P09017 AC003957.1-201ENST00000625108 2673 ntBASIC18.38■□□□□ 0.53
HOXC4P09017 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.38■□□□□ 0.53
HOXC4P09017 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC4P09017 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC4P09017 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC4P09017 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC4P09017 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HOXC4P09017 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
HOXC4P09017 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
HOXC4P09017 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.37■□□□□ 0.53
HOXC4P09017 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 AC006333.2-201ENST00000607957 2099 ntBASIC18.37■□□□□ 0.53
HOXC4P09017 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
HOXC4P09017 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
HOXC4P09017 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
HOXC4P09017 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
HOXC4P09017 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 HLA-F-220ENST00000434407 884 ntBASIC18.37■□□□□ 0.53
HOXC4P09017 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms