Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
LDLRP01130 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.22■□□□□ 0.51
LDLRP01130 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.22■□□□□ 0.51
LDLRP01130 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.22■□□□□ 0.51
LDLRP01130 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.22■□□□□ 0.51
LDLRP01130 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.22■□□□□ 0.51
LDLRP01130 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.22■□□□□ 0.51
LDLRP01130 AC120498.8-201ENST00000614275 531 ntBASIC18.22■□□□□ 0.51
LDLRP01130 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.22■□□□□ 0.51
LDLRP01130 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
LDLRP01130 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.22■□□□□ 0.51
LDLRP01130 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LDLRP01130 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
LDLRP01130 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.51
LDLRP01130 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
LDLRP01130 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.21■□□□□ 0.51
LDLRP01130 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.21■□□□□ 0.51
LDLRP01130 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.21■□□□□ 0.51
LDLRP01130 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.21■□□□□ 0.51
LDLRP01130 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.21■□□□□ 0.51
LDLRP01130 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.21■□□□□ 0.51
LDLRP01130 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.21■□□□□ 0.51
LDLRP01130 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDLRP01130 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
LDLRP01130 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
LDLRP01130 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.2■□□□□ 0.5
LDLRP01130 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.2■□□□□ 0.5
LDLRP01130 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.2■□□□□ 0.5
LDLRP01130 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LDLRP01130 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 TEX21P-204ENST00000641479 1693 ntBASIC18.2■□□□□ 0.5
LDLRP01130 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LDLRP01130 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.2■□□□□ 0.5
LDLRP01130 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.2■□□□□ 0.5
LDLRP01130 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
LDLRP01130 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.2■□□□□ 0.5
LDLRP01130 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.2■□□□□ 0.5
LDLRP01130 AC026471.5-201ENST00000615068 467 ntBASIC18.2■□□□□ 0.5
LDLRP01130 AC092865.7-201ENST00000641832 219 ntBASIC18.2■□□□□ 0.5
LDLRP01130 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.2■□□□□ 0.5
LDLRP01130 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.2■□□□□ 0.5
LDLRP01130 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDLRP01130 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.2■□□□□ 0.5
LDLRP01130 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.2■□□□□ 0.5
LDLRP01130 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.19■□□□□ 0.5
LDLRP01130 AL031598.1-201ENST00000561511 1773 ntBASIC18.19■□□□□ 0.5
LDLRP01130 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
LDLRP01130 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.19■□□□□ 0.5
LDLRP01130 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LDLRP01130 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.19■□□□□ 0.5
LDLRP01130 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
LDLRP01130 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 MMP23A-201ENST00000234610 1017 ntBASIC18.19■□□□□ 0.5
LDLRP01130 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms