Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP1O15259 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP1O15259 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP1O15259 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP1O15259 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
NPHP1O15259 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC23.72■■□□□ 1.39
NPHP1O15259 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP1O15259 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
NPHP1O15259 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
NPHP1O15259 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
NPHP1O15259 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
NPHP1O15259 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
NPHP1O15259 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP1O15259 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
NPHP1O15259 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
NPHP1O15259 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC23.71■■□□□ 1.39
NPHP1O15259 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC23.71■■□□□ 1.39
NPHP1O15259 MIR3180-5-201ENST00000583743 153 ntBASIC23.71■■□□□ 1.39
NPHP1O15259 IL11-204ENST00000590625 1028 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP1O15259 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC23.71■■□□□ 1.39
NPHP1O15259 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP1O15259 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC23.71■■□□□ 1.39
NPHP1O15259 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP1O15259 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
NPHP1O15259 SDHAP1-207ENST00000440850 2000 ntBASIC23.71■■□□□ 1.39
NPHP1O15259 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
NPHP1O15259 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP1O15259 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC23.7■■□□□ 1.38
NPHP1O15259 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP1O15259 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP1O15259 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC23.7■■□□□ 1.38
NPHP1O15259 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP1O15259 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
NPHP1O15259 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC23.7■■□□□ 1.38
NPHP1O15259 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC23.7■■□□□ 1.38
NPHP1O15259 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP1O15259 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC23.7■■□□□ 1.38
NPHP1O15259 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC23.7■■□□□ 1.38
NPHP1O15259 SPEG-225ENST00000617028 815 ntTSL 5 BASIC23.7■■□□□ 1.38
NPHP1O15259 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC23.7■■□□□ 1.38
NPHP1O15259 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
NPHP1O15259 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP1O15259 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP1O15259 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC23.69■■□□□ 1.38
NPHP1O15259 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
NPHP1O15259 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
NPHP1O15259 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC23.69■■□□□ 1.38
NPHP1O15259 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
NPHP1O15259 KRT8P26-201ENST00000534154 1276 ntBASIC23.69■■□□□ 1.38
NPHP1O15259 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC23.69■■□□□ 1.38
NPHP1O15259 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC23.69■■□□□ 1.38
NPHP1O15259 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC23.69■■□□□ 1.38
NPHP1O15259 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 AL162741.1-201ENST00000565563 1558 ntBASIC23.69■■□□□ 1.38
NPHP1O15259 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NPHP1O15259 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 AC092667.1-201ENST00000434301 2586 ntBASIC23.68■■□□□ 1.38
NPHP1O15259 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC23.68■■□□□ 1.38
NPHP1O15259 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC23.68■■□□□ 1.38
NPHP1O15259 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC23.68■■□□□ 1.38
NPHP1O15259 KRT18P1-202ENST00000452408 1331 ntBASIC23.68■■□□□ 1.38
NPHP1O15259 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 NAA38-203ENST00000575071 553 ntTSL 2 BASIC23.68■■□□□ 1.38
NPHP1O15259 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC23.68■■□□□ 1.38
NPHP1O15259 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC23.68■■□□□ 1.38
NPHP1O15259 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
NPHP1O15259 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms