Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.18■□□□□ 0.5
CDX4O14627 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.17■□□□□ 0.5
CDX4O14627 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CDX4O14627 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CDX4O14627 AC008556.1-201ENST00000610908 2040 ntBASIC18.17■□□□□ 0.5
CDX4O14627 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.17■□□□□ 0.5
CDX4O14627 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CDX4O14627 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.17■□□□□ 0.5
CDX4O14627 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.17■□□□□ 0.5
CDX4O14627 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.17■□□□□ 0.5
CDX4O14627 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CDX4O14627 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.17■□□□□ 0.5
CDX4O14627 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.17■□□□□ 0.5
CDX4O14627 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX4O14627 AC243591.1-201ENST00000452967 1364 ntBASIC18.17■□□□□ 0.5
CDX4O14627 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CDX4O14627 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.16■□□□□ 0.5
CDX4O14627 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC18.16■□□□□ 0.5
CDX4O14627 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.16■□□□□ 0.5
CDX4O14627 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
CDX4O14627 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CDX4O14627 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.16■□□□□ 0.5
CDX4O14627 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CDX4O14627 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CDX4O14627 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.16■□□□□ 0.5
CDX4O14627 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.16■□□□□ 0.5
CDX4O14627 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
CDX4O14627 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.16■□□□□ 0.5
CDX4O14627 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 VENTXP7-201ENST00000475503 772 ntBASIC18.16■□□□□ 0.5
CDX4O14627 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.16■□□□□ 0.5
CDX4O14627 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.16■□□□□ 0.5
CDX4O14627 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.16■□□□□ 0.5
CDX4O14627 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CDX4O14627 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.16■□□□□ 0.5
CDX4O14627 AC073314.1-201ENST00000568729 2216 ntBASIC18.16■□□□□ 0.5
CDX4O14627 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.16■□□□□ 0.5
CDX4O14627 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX4O14627 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX4O14627 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CDX4O14627 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CDX4O14627 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 POM121L3P-201ENST00000419331 1163 ntBASIC18.15■□□□□ 0.5
CDX4O14627 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX4O14627 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX4O14627 AF186996.4-201ENST00000467186 377 ntBASIC18.15■□□□□ 0.5
CDX4O14627 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.15■□□□□ 0.5
CDX4O14627 TERC-201ENST00000602385 541 ntBASIC18.15■□□□□ 0.5
CDX4O14627 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.15■□□□□ 0.5
CDX4O14627 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX4O14627 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX4O14627 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CDX4O14627 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX4O14627 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.14■□□□□ 0.5
CDX4O14627 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CDX4O14627 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CDX4O14627 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX4O14627 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms