Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
CBX4O00257 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.27■□□□□ 0.68
CBX4O00257 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.27■□□□□ 0.68
CBX4O00257 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CBX4O00257 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CBX4O00257 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CBX4O00257 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.27■□□□□ 0.68
CBX4O00257 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.27■□□□□ 0.68
CBX4O00257 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CBX4O00257 DUX4L26-201ENST00000489078 1255 ntBASIC19.27■□□□□ 0.68
CBX4O00257 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.27■□□□□ 0.68
CBX4O00257 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.27■□□□□ 0.67
CBX4O00257 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CBX4O00257 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CBX4O00257 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CBX4O00257 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CBX4O00257 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.26■□□□□ 0.67
CBX4O00257 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CBX4O00257 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.26■□□□□ 0.67
CBX4O00257 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CBX4O00257 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CBX4O00257 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CBX4O00257 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CBX4O00257 MIR4674-201ENST00000582457 87 ntBASIC19.26■□□□□ 0.67
CBX4O00257 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CBX4O00257 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CBX4O00257 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CBX4O00257 GPAT2P1-201ENST00000444924 1672 ntBASIC19.26■□□□□ 0.67
CBX4O00257 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.26■□□□□ 0.67
CBX4O00257 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CBX4O00257 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.25■□□□□ 0.67
CBX4O00257 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.25■□□□□ 0.67
CBX4O00257 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.25■□□□□ 0.67
CBX4O00257 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
CBX4O00257 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
CBX4O00257 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.25■□□□□ 0.67
CBX4O00257 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.25■□□□□ 0.67
CBX4O00257 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.25■□□□□ 0.67
CBX4O00257 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.25■□□□□ 0.67
CBX4O00257 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.25■□□□□ 0.67
CBX4O00257 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 KRT8P45-201ENST00000414328 1447 ntBASIC19.25■□□□□ 0.67
CBX4O00257 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CBX4O00257 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.24■□□□□ 0.67
CBX4O00257 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CBX4O00257 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
CBX4O00257 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
CBX4O00257 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CBX4O00257 RNF165-205ENST00000588679 2904 ntBASIC19.24■□□□□ 0.67
CBX4O00257 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CBX4O00257 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.24■□□□□ 0.67
CBX4O00257 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CBX4O00257 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.24■□□□□ 0.67
CBX4O00257 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.24■□□□□ 0.67
CBX4O00257 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.24■□□□□ 0.67
CBX4O00257 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CBX4O00257 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CBX4O00257 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CBX4O00257 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CBX4O00257 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CBX4O00257 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CBX4O00257 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CBX4O00257 AL512353.2-201ENST00000448759 1962 ntBASIC19.23■□□□□ 0.67
CBX4O00257 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CBX4O00257 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CBX4O00257 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CBX4O00257 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.23■□□□□ 0.67
CBX4O00257 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CBX4O00257 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.23■□□□□ 0.67
CBX4O00257 AL512604.3-201ENST00000569583 964 ntBASIC19.23■□□□□ 0.67
CBX4O00257 WWOX-216ENST00000569818 525 ntBASIC19.23■□□□□ 0.67
CBX4O00257 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CBX4O00257 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CBX4O00257 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms