Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 KRT19P1-201ENST00000405746 1186 ntBASIC13.41□□□□□ -0.26
LINC01549A6NIU2 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 AC007322.4-201ENST00000509611 723 ntBASIC13.41□□□□□ -0.26
LINC01549A6NIU2 TERF1P2-201ENST00000583350 1212 ntBASIC13.41□□□□□ -0.26
LINC01549A6NIU2 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
LINC01549A6NIU2 AC009053.2-201ENST00000563701 2365 ntBASIC13.4□□□□□ -0.26
LINC01549A6NIU2 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 TERF1P5-201ENST00000477545 1207 ntBASIC13.4□□□□□ -0.26
LINC01549A6NIU2 PBX2P1-201ENST00000493219 1291 ntBASIC13.4□□□□□ -0.26
LINC01549A6NIU2 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC01549A6NIU2 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
LINC01549A6NIU2 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC13.4□□□□□ -0.27
LINC01549A6NIU2 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.27
LINC01549A6NIU2 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC13.4□□□□□ -0.27
LINC01549A6NIU2 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.27
LINC01549A6NIU2 AL139384.1-201ENST00000612143 3047 ntBASIC13.39□□□□□ -0.27
LINC01549A6NIU2 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 GCK-205ENST00000437084 1385 ntTSL 5 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC01549A6NIU2 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms