Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC019129.1-201ENST00000403786 261 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 MIR1261-201ENST00000408659 82 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 MICF-203ENST00000432679 129 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 MIR2113-201ENST00000459007 91 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 AP004217.1-201ENST00000480579 346 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 MIR7978-201ENST00000636158 59 ntBASIC2.85□□□□□ -1.95
NPAS3Q8IXF0 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.95
NPAS3Q8IXF0 RNU6-1216P-201ENST00000362590 107 ntBASIC2.84□□□□□ -1.95
NPAS3Q8IXF0 RNU6-957P-201ENST00000363652 99 ntBASIC2.84□□□□□ -1.95
NPAS3Q8IXF0 SNORD115-22-201ENST00000364456 82 ntBASIC2.84□□□□□ -1.95
NPAS3Q8IXF0 AC023141.11-201ENST00000508864 202 ntBASIC2.84□□□□□ -1.95
NPAS3Q8IXF0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 SNORA25B-201ENST00000365507 128 ntBASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 MIR518E-201ENST00000385252 88 ntBASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 RNA5SP148-201ENST00000516527 94 ntBASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 MIR3169-201ENST00000578032 83 ntBASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 AL357312.1-201ENST00000603879 298 ntBASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 AL627230.6-201ENST00000611129 280 ntBASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.83□□□□□ -1.96
NPAS3Q8IXF0 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.82□□□□□ -1.96
NPAS3Q8IXF0 Y_RNA.119-201ENST00000363301 96 ntBASIC2.82□□□□□ -1.96
NPAS3Q8IXF0 RNU6-1051P-201ENST00000365471 102 ntBASIC2.82□□□□□ -1.96
NPAS3Q8IXF0 SNORA67.4-201ENST00000384688 142 ntBASIC2.82□□□□□ -1.96
NPAS3Q8IXF0 Y_RNA.722-201ENST00000517279 114 ntBASIC2.82□□□□□ -1.96
NPAS3Q8IXF0 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.82□□□□□ -1.96
NPAS3Q8IXF0 AL662814.1-201ENST00000617364 121 ntBASIC2.82□□□□□ -1.96
NPAS3Q8IXF0 AC108206.1-201ENST00000570186 4159 ntBASIC2.82□□□□□ -1.96
NPAS3Q8IXF0 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 Y_RNA.42-201ENST00000362660 108 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 RNU6-1079P-201ENST00000362861 110 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 SNORD113.1-201ENST00000363280 73 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 SNORD38B-201ENST00000384690 67 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 RNU6ATAC33P-201ENST00000408647 126 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 AC245517.4-201ENST00000448601 281 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 AC003982.1-202ENST00000469928 248 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 AC008413.1-201ENST00000511864 177 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 MIR548AO-201ENST00000579992 96 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 AC069503.3-201ENST00000618674 145 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 SNORD38B-202ENST00000625943 69 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 AL161431.1-201ENST00000618966 4205 ntBASIC2.81□□□□□ -1.96
NPAS3Q8IXF0 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 RNU6-949P-201ENST00000384040 107 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 RNU6-604P-201ENST00000390917 100 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 SNORA40.6-201ENST00000391153 128 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 RNU1-101P-201ENST00000391171 127 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 MIR887-201ENST00000401258 79 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 RNU7-106P-201ENST00000459514 67 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 RNA5SP445-201ENST00000515889 115 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 MIR5094-201ENST00000578766 85 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 MIR8053-201ENST00000613344 75 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 U4.3-201ENST00000621047 82 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 GABRG2-229ENST00000641017 3628 ntBASIC2.8□□□□□ -1.96
NPAS3Q8IXF0 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 MIR26A1-201ENST00000362205 77 ntBASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 RNU6-669P-201ENST00000365575 107 ntBASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 RNU6-1031P-201ENST00000384773 107 ntBASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 RNA5SP344-201ENST00000411081 104 ntBASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 AL691482.2-201ENST00000457453 84 ntBASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 RNU1-41P-201ENST00000516161 162 ntBASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 RNU1-48P-201ENST00000516400 162 ntBASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 MIR3140-201ENST00000583685 90 ntBASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 AC008133.2-201ENST00000624540 351 ntBASIC2.79□□□□□ -1.96
NPAS3Q8IXF0 AC131280.1-202ENST00000624067 4211 ntBASIC2.78□□□□□ -1.96
NPAS3Q8IXF0 HMGN2P39-201ENST00000398005 273 ntBASIC2.78□□□□□ -1.96
NPAS3Q8IXF0 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.78□□□□□ -1.96
NPAS3Q8IXF0 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
NPAS3Q8IXF0 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
NPAS3Q8IXF0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
NPAS3Q8IXF0 U8.9-201ENST00000365667 134 ntBASIC2.77□□□□□ -1.97
NPAS3Q8IXF0 RNU6-936P-201ENST00000384005 107 ntBASIC2.77□□□□□ -1.97
NPAS3Q8IXF0 SNORA70B-201ENST00000384210 135 ntBASIC2.77□□□□□ -1.97
NPAS3Q8IXF0 RNA5SP24-201ENST00000516478 95 ntBASIC2.77□□□□□ -1.97
NPAS3Q8IXF0 SNORD59.2-201ENST00000516873 68 ntBASIC2.77□□□□□ -1.97
NPAS3Q8IXF0 SNORA74.3-201ENST00000517108 154 ntBASIC2.77□□□□□ -1.97
NPAS3Q8IXF0 RNU6-711P-201ENST00000517255 106 ntBASIC2.77□□□□□ -1.97
NPAS3Q8IXF0 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 RNU6-369P-201ENST00000362515 102 ntBASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 RNU6-1187P-201ENST00000364771 110 ntBASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 RNU1-109P-201ENST00000383960 147 ntBASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 RNA5SP282-201ENST00000516355 108 ntBASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 SNORA31.26-201ENST00000517250 137 ntBASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 SNORD53-201ENST00000579969 78 ntBASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
NPAS3Q8IXF0 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms