Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.11□□□□□ -2.07
LIMS1P48059 MIR424-201ENST00000362227 98 ntBASIC2.11□□□□□ -2.07
LIMS1P48059 snoU13.15-201ENST00000459407 104 ntBASIC2.11□□□□□ -2.07
LIMS1P48059 RNU6-162P-201ENST00000516228 103 ntBASIC2.11□□□□□ -2.07
LIMS1P48059 MIR4439-201ENST00000583746 80 ntBASIC2.11□□□□□ -2.07
LIMS1P48059 MIR8055-201ENST00000610739 97 ntBASIC2.11□□□□□ -2.07
LIMS1P48059 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LIMS1P48059 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LIMS1P48059 SNORA1.1-201ENST00000364671 133 ntBASIC2.1□□□□□ -2.07
LIMS1P48059 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.1□□□□□ -2.07
LIMS1P48059 RNU4-53P-201ENST00000410828 140 ntBASIC2.1□□□□□ -2.07
LIMS1P48059 AL356320.1-201ENST00000429616 163 ntBASIC2.1□□□□□ -2.07
LIMS1P48059 snoU13.16-201ENST00000459350 104 ntBASIC2.1□□□□□ -2.07
LIMS1P48059 AC079804.2-201ENST00000490376 200 ntBASIC2.1□□□□□ -2.07
LIMS1P48059 RNA5SP395-201ENST00000516567 118 ntBASIC2.1□□□□□ -2.07
LIMS1P48059 Y_RNA.705-201ENST00000516862 110 ntBASIC2.1□□□□□ -2.07
LIMS1P48059 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.1□□□□□ -2.07
LIMS1P48059 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
LIMS1P48059 SNORD115-35-201ENST00000365122 82 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 Y_RNA.467-201ENST00000384297 102 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 SNORA3.2-201ENST00000408221 125 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 RNU6-887P-201ENST00000410660 100 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 RNU2-7P-201ENST00000410794 178 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 RNU2-40P-201ENST00000410833 196 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 AC022137.1-201ENST00000483735 151 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 AC234781.5-201ENST00000508429 271 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 AC108729.3-201ENST00000513484 108 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 Y_RNA.659-201ENST00000515994 113 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 RNU6-1006P-201ENST00000516998 103 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 SNORA74.3-201ENST00000517108 154 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 AC046143.2-201ENST00000609789 160 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 SNORD3E-202ENST00000627253 216 ntBASIC2.09□□□□□ -2.07
LIMS1P48059 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.08□□□□□ -2.08
LIMS1P48059 MIRLET7G-201ENST00000362280 84 ntBASIC2.08□□□□□ -2.08
LIMS1P48059 SNORA32-201ENST00000384072 121 ntBASIC2.08□□□□□ -2.08
LIMS1P48059 RNU6-972P-201ENST00000391208 107 ntBASIC2.08□□□□□ -2.08
LIMS1P48059 HMGN1P33-201ENST00000432945 451 ntBASIC2.08□□□□□ -2.08
LIMS1P48059 RNU7-35P-201ENST00000517174 62 ntBASIC2.08□□□□□ -2.08
LIMS1P48059 MIR4769-201ENST00000584126 77 ntBASIC2.08□□□□□ -2.08
LIMS1P48059 MIR5002-201ENST00000584713 97 ntBASIC2.08□□□□□ -2.08
LIMS1P48059 MIR8065-201ENST00000620577 100 ntBASIC2.08□□□□□ -2.08
LIMS1P48059 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.07□□□□□ -2.08
LIMS1P48059 RNU6-228P-201ENST00000362700 106 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 RNY1P1-201ENST00000364372 112 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 AC090844.1-201ENST00000422019 156 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 RPL23AP6-201ENST00000446637 472 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 AC109327.2-201ENST00000448339 378 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 MIR514B-201ENST00000516774 80 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 DEFB122-202ENST00000569013 197 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 MIR4648-201ENST00000580107 72 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 AC096720.1-201ENST00000604441 183 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 SNORD14A-201ENST00000606526 91 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.07□□□□□ -2.08
LIMS1P48059 AC025521.1-201ENST00000621624 286 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 MIR3202-2-201ENST00000635980 79 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 Z97988.1-201ENST00000637697 135 ntBASIC2.07□□□□□ -2.08
LIMS1P48059 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.06□□□□□ -2.08
LIMS1P48059 Y_RNA.190-201ENST00000363964 101 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 RNU6-219P-201ENST00000364728 107 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 RNA5SP100-201ENST00000410903 110 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 RNA5SP59-201ENST00000410922 110 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 UBL5P1-201ENST00000507979 193 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 RNU7-2P-201ENST00000516096 62 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 RNU7-43P-201ENST00000516554 64 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 AL512310.12-203ENST00000640543 90 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 AP000553.5-201ENST00000641933 54 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 AC080100.1-201ENST00000624239 5356 ntBASIC2.06□□□□□ -2.08
LIMS1P48059 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
LIMS1P48059 Y_RNA.73-201ENST00000362910 113 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 Y_RNA.140-201ENST00000363474 103 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 RNU6-457P-201ENST00000363999 107 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 Y_RNA.247-201ENST00000364500 92 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 RNU6-497P-201ENST00000365316 104 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 SNORD116-22-201ENST00000384430 92 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 RNU6-342P-201ENST00000384521 104 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 RNU6-1067P-201ENST00000384752 107 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 MIR206-201ENST00000384872 86 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 RNU6-1307P-201ENST00000391012 103 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 Z98742.3-201ENST00000418637 326 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 snoU13.23-201ENST00000458863 104 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 RPS27P21-201ENST00000486977 252 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.05□□□□□ -2.08
LIMS1P48059 FAM106DP-201ENST00000586416 501 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 MIR376B-201ENST00000614515 100 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 IGLL4P-201ENST00000614590 133 ntBASIC2.05□□□□□ -2.08
LIMS1P48059 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
LIMS1P48059 SNORD116-10-201ENST00000363791 102 ntBASIC2.04□□□□□ -2.08
LIMS1P48059 SNORA3A-201ENST00000364113 130 ntBASIC2.04□□□□□ -2.08
LIMS1P48059 RNU6-1276P-201ENST00000365372 104 ntBASIC2.04□□□□□ -2.08
LIMS1P48059 RNU6-979P-201ENST00000383896 107 ntBASIC2.04□□□□□ -2.08
LIMS1P48059 RNU6-1124P-201ENST00000384169 107 ntBASIC2.04□□□□□ -2.08
LIMS1P48059 RNU6-813P-201ENST00000384691 107 ntBASIC2.04□□□□□ -2.08
LIMS1P48059 RNU6-402P-201ENST00000410678 103 ntBASIC2.04□□□□□ -2.08
LIMS1P48059 HMGN2P38-201ENST00000423806 265 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 232.8 ms